View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13604_low_3 (Length: 471)
Name: NF13604_low_3
Description: NF13604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13604_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 46 - 449
Target Start/End: Original strand, 53493329 - 53493732
Alignment:
| Q |
46 |
tcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaat |
145 |
Q |
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| T |
53493329 |
tcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaat |
53493428 |
T |
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| Q |
146 |
aaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctcttaa |
245 |
Q |
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| T |
53493429 |
aaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaagtctgactatctatacttggatttctaattctcttaa |
53493528 |
T |
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| Q |
246 |
tattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactctccattcaaaaattaagtgtagtgattg |
345 |
Q |
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| T |
53493529 |
tattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacgttcaactgtccattcacaaattaagtgtagtgattg |
53493628 |
T |
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| Q |
346 |
ttctatcttttcatctcacccacttaaactacctggatatgtgattatgattgatggatataatttatgtacatcaaacgacaatatgctatgacatggt |
445 |
Q |
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| T |
53493629 |
ttctatcttttcatctcacccacttaaactacctggatatgtgattatgattgatggatataatttatgtacatcaaacgacaatatgctatgacatggt |
53493728 |
T |
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| Q |
446 |
agtg |
449 |
Q |
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| T |
53493729 |
agtg |
53493732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 86 - 305
Target Start/End: Original strand, 16072530 - 16072748
Alignment:
| Q |
86 |
gagaacaataaatattgtattgcttagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaa |
185 |
Q |
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| T |
16072530 |
gagaacaataaataatgtattgcttagtttcctgaagctatagtacatgagacactaaataaaatcatataaatgatcactcttttctcaattttattga |
16072629 |
T |
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| Q |
186 |
gaataataataaaagtgtatt--aagtctgactatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataat |
283 |
Q |
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| T |
16072630 |
g---aatagtagaggtgtatttgttgtctgactatctatacttggatttctaactctctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaat |
16072726 |
T |
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| Q |
284 |
tcttgctgttggaatgacaaat |
305 |
Q |
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| T |
16072727 |
tcttgtggttggaaagacaaat |
16072748 |
T |
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