View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13604_low_4 (Length: 417)
Name: NF13604_low_4
Description: NF13604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13604_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 1744103 - 1744301
Alignment:
| Q |
10 |
caataatatgttaaggtgatctgtaatattcacttttgagactttttgcaatgtggtgtggtgccatgaaataatcctcaaccccacatgcccaatattt |
109 |
Q |
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| T |
1744103 |
caatcatatattaaggtgatctgtattattcacttttgagactttttgcattgtggtgtggtgccctgaaatactccataaccccacatgcccaattttt |
1744202 |
T |
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| Q |
110 |
ttatatgaacaatcataatttaaatgtgtttttcttacatggagcccaaaccttatccattttttagtcatttatatgaataatcaacacatgatttct |
208 |
Q |
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| T |
1744203 |
ttatatgaacaatcatgatttaaatgtgtttttcttacatggagcccaaaccttatccatattttagtcatttctgtgaatgtgcaacacatgatttct |
1744301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 1749261 - 1749400
Alignment:
| Q |
15 |
atatgttaaggtgatctgtaatattcacttttgagac---tttttgcaatgtggtgtggtgccatgaaataatcctcaaccccacatgcccaatattttt |
111 |
Q |
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| T |
1749261 |
atatgttaaggtgatctgtaatattcacttttgaggcatttttttgcattgtgctgtggttccatgaaatactccataaatccacattcccaattttttt |
1749360 |
T |
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| Q |
112 |
atatgaacaatcataatttaaatgtgtttttcttacatgg |
151 |
Q |
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| T |
1749361 |
atatgaacaatcataatttaaatgtgtttttcttacatgg |
1749400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 1744322 - 1744379
Alignment:
| Q |
296 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
353 |
Q |
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| T |
1744322 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
1744379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 1744415 - 1744454
Alignment:
| Q |
360 |
tatttaaaaataatattttatctcaaaatgagggttactt |
399 |
Q |
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| T |
1744415 |
tatttaaaaataatatttaatctcaaaacgagggttactt |
1744454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 1749465 - 1749500
Alignment:
| Q |
230 |
tcatcaacaacttttaaaactggtcatgctttccat |
265 |
Q |
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| T |
1749465 |
tcatcaacaacttgtaaaactggtcatgctttccat |
1749500 |
T |
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