View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13605_high_1 (Length: 632)
Name: NF13605_high_1
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13605_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 34525260 - 34525552
Alignment:
| Q |
11 |
catcatcacacaaataaaa-cataatggaaatgaaaaaaggaactagtttccaatgatgcgagagtactcactagggaaatacagacttgactttctcaa |
109 |
Q |
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| T |
34525260 |
catcatcacacaaataaaaacataatggaaatgaaaaaaggaactagtttccaatgatgcgagagtactcactagggaaatacagacttgactttctcaa |
34525359 |
T |
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| Q |
110 |
tatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaaactgacaccgggaatggaacctaaaccaaattaatc |
209 |
Q |
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| T |
34525360 |
tatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaaactgacaccaggaatggaacctaaaccaaattaatc |
34525459 |
T |
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| Q |
210 |
acattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaa--atatgttataaaaagagttatcaactatgaaatacaaaact |
300 |
Q |
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| T |
34525460 |
acattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaatatatgttataaaaagagttatcaactatgaaatacaaaact |
34525552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 436 - 615
Target Start/End: Original strand, 34525720 - 34525899
Alignment:
| Q |
436 |
actcacttagtgtgccacaataaatttatatatgttgaacccaaacatcataaaatattgtcaaatcacgttcaaagacattaaacacacgaatagagac |
535 |
Q |
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| T |
34525720 |
actcacttaatgtgccacaataaatttatatatgttgaacccaaacatcataaaatatcgtcaaatcacgttcaaagacattaaacacacgaatagagac |
34525819 |
T |
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| Q |
536 |
ggttaagaatatcgtcaacgtgaatccaaacactacattaatcacaaaaaagtcaagaatattgaatcaaccaattaact |
615 |
Q |
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| T |
34525820 |
ggtcaagaatatcgtcaacgtgaatccaaacactacattgatcacaaaaaagtcaagaatattgaatcaaccaattaact |
34525899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 74 - 298
Target Start/End: Original strand, 34521707 - 34521933
Alignment:
| Q |
74 |
gtactcactagggaaatacagacttgactttctcaatatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaa |
173 |
Q |
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| T |
34521707 |
gtactcactacggaaatacagacttgactttctcaatatccagagcttgttggagagaatgaggaacccctagtttgatctgcaatttcatctgaccaaa |
34521806 |
T |
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| Q |
174 |
actgacaccgggaatggaacctaaaccaaattaatcacattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaata--tgttataaa |
271 |
Q |
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| T |
34521807 |
actgacaccaggaatggaacctaaaccaaattcatctcattagaaatttagaattgaagatacaattttgaacaacaattgtcaaaatatctggtttaaa |
34521906 |
T |
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| Q |
272 |
aagagttatcaactatgaaatacaaaa |
298 |
Q |
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| T |
34521907 |
aagagttatcaactatgaaatacaaaa |
34521933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 44222521 - 44222484
Alignment:
| Q |
476 |
ccaaacatcataaaatattgtcaaatcacgttcaaaga |
513 |
Q |
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| T |
44222521 |
ccaaacatcataaaatattttcaaatcatgttcaaaga |
44222484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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