View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13605_high_3 (Length: 498)
Name: NF13605_high_3
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13605_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 32144371 - 32144851
Alignment:
| Q |
1 |
tcatcatttggtgcactaatttgaaaccatcattttaaaaggtattccacaaagagagtggttgtcaatagattattcttagacttgattcttaagtaat |
100 |
Q |
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| T |
32144371 |
tcatcatttggtgcactaatttgaaagcatcattttaaaaagtattccacaatgagagtggttctcaaaagattattcttagatttgattcttatgtaat |
32144470 |
T |
|
| Q |
101 |
gtgagacttttttatgtatcgaaacaaaatcttattattcagccattaccattaatagtggtattaaaataccgctggtctaaaataaattatcttgtga |
200 |
Q |
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| T |
32144471 |
gtgagacttttttatgtaccgaaacaaaatcttattattcagccattaccattaccagtggtactaaaataccgctagtctaaaataaattatcttgtgg |
32144570 |
T |
|
| Q |
201 |
acccactatctcggtacacattacggtcacacttttagaccatttggatcgcgtagagaattattttaaatttttgaagtatatagtgtaatattttgat |
300 |
Q |
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| T |
32144571 |
acccattatctcggtacacattacggtcacactttcagatcatttggatcgcgtagagaattattttaaatttttaaagtatatagtgtaatattttgat |
32144670 |
T |
|
| Q |
301 |
gatcaactttattcttaatgccttt-nnnnnnnctttatgtttaatgcttattacaacataaattttgnnnnnnnnnatcctccaccctnnnnnnnnttg |
399 |
Q |
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| T |
32144671 |
gatcaactttattcttaatgcctttaaaaaaaactttatgtttaatgcttattacaacat-aattttatttttttttatcctccaccctaaaaaaaattg |
32144769 |
T |
|
| Q |
400 |
tatttatatattatagattatttggtccacccgaacnnnnnnnnnnctatctaactctcccactaaccattacattgctaact |
482 |
Q |
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| T |
32144770 |
tatttatatattatagattatttagtccacccgaac-tttttttttctatctaactctcccactaaccattacagtgctaact |
32144851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 51810290 - 51810257
Alignment:
| Q |
333 |
ctttatgtttaatgcttattacaacataaatttt |
366 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
51810290 |
ctttatgtttaatgcttattataacataaatttt |
51810257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 4672308 - 4672271
Alignment:
| Q |
89 |
ttcttaagtaatgtgagacttttttatgtatcgaaaca |
126 |
Q |
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| T |
4672308 |
ttctttagcaatgtgagacttttttatgtatcgaaaca |
4672271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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