View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13605_high_7 (Length: 239)

Name: NF13605_high_7
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13605_high_7
NF13605_high_7
[»] chr1 (7 HSPs)
chr1 (1-100)||(12378562-12378661)
chr1 (127-221)||(12362385-12362492)
chr1 (127-221)||(12378737-12378844)
chr1 (1-46)||(12360140-12360185)
chr1 (48-100)||(12362258-12362309)
chr1 (100-130)||(12362327-12362357)
chr1 (100-130)||(12378679-12378709)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12378562 - 12378661
Alignment:
Q  1 tttaattttcggatagtatggatggaaatcaaatgacaaagaaggtagtccttccctgagatcattctctacgaatcttatttccctcactttatctcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12378562 tttaattttcggatagtatggatggaaatcaaatgacaaagaaggtagtccttccctgagatcattctctacgaatcttatttccctcactatatctcga 12378661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 12362385 - 12362492
Alignment:
Q  127 atattttcaaatccttcaaaaattggatgaaaagaat-------------atgactgaccaagtttagccatacctccaaaacataattaaatatgaata 213  Q
    |||||||||||||||||||||||||||||||||||||             |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12362385 atattttcaaatccttcaaaaattggatgaaaagaatgatttcattaaatatgactaaccaagtttagccatacctccaaaacataattaaatatgaata 12362484  T
Q  214 tggtttaa 221  Q
    ||||||||    
T  12362485 tggtttaa 12362492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 12378737 - 12378844
Alignment:
Q  127 atattttcaaatccttcaaaaattggatgaaaagaat-------------atgactgaccaagtttagccatacctccaaaacataattaaatatgaata 213  Q
    |||||||||||||||||||||||||||||||||||||             |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12378737 atattttcaaatccttcaaaaattggatgaaaagaatgatttcattaaatatgactaaccaagtttagccatacctccaaaacataattaaatatgaata 12378836  T
Q  214 tggtttaa 221  Q
    ||||||||    
T  12378837 tggtttaa 12378844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12360140 - 12360185
Alignment:
Q  1 tttaattttcggatagtatggatggaaatcaaatgacaaagaaggt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12360140 tttaattttcggatagtatggatggaaatcaaatgacaaagaaggt 12360185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 12362258 - 12362309
Alignment:
Q  48 gtccttccctgagatcattctctacgaatcttatttccctcactttatctcga 100  Q
    |||||||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  12362258 gtccttccctgagatc-tactctacgaatcttatttccctcactatatctcga 12362309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 12362327 - 12362357
Alignment:
Q  100 agtctacatattctttatatatctcttatat 130  Q
    |||||||||||||||||||||||||||||||    
T  12362327 agtctacatattctttatatatctcttatat 12362357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 12378679 - 12378709
Alignment:
Q  100 agtctacatattctttatatatctcttatat 130  Q
    |||||||||||||||||||||||||||||||    
T  12378679 agtctacatattctttatatatctcttatat 12378709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University