View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13605_low_2 (Length: 515)

Name: NF13605_low_2
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13605_low_2
NF13605_low_2
[»] chr2 (7 HSPs)
chr2 (106-464)||(9047926-9048282)
chr2 (40-279)||(8986581-8986819)
chr2 (40-229)||(32290862-32291046)
chr2 (40-235)||(38583709-38583900)
chr2 (40-163)||(1172980-1173099)
chr2 (217-281)||(1173132-1173196)
chr2 (80-196)||(20593664-20593778)
[»] chr1 (4 HSPs)
chr1 (40-277)||(15629570-15629807)
chr1 (85-250)||(9167991-9168152)
chr1 (41-96)||(3774536-3774591)
chr1 (81-154)||(11993412-11993481)
[»] chr3 (5 HSPs)
chr3 (38-279)||(50295937-50296178)
chr3 (92-279)||(46691712-46691900)
chr3 (35-115)||(42531107-42531187)
chr3 (217-279)||(42531029-42531091)
chr3 (41-99)||(22821079-22821136)
[»] chr7 (10 HSPs)
chr7 (40-279)||(46963283-46963521)
chr7 (43-252)||(44338731-44338939)
chr7 (40-160)||(15614469-15614585)
chr7 (41-130)||(3902045-3902133)
chr7 (48-189)||(3889498-3889634)
chr7 (128-207)||(26403269-26403348)
chr7 (41-130)||(3890003-3890090)
chr7 (219-279)||(15614589-15614649)
chr7 (300-343)||(8736838-8736881)
chr7 (80-130)||(3889296-3889346)
[»] chr4 (1 HSPs)
chr4 (40-279)||(16871305-16871543)
[»] chr6 (5 HSPs)
chr6 (40-279)||(9290859-9291098)
chr6 (128-237)||(18984226-18984335)
chr6 (40-130)||(28063218-28063308)
chr6 (40-115)||(21862382-21862457)
chr6 (170-227)||(10741605-10741661)
[»] chr5 (2 HSPs)
chr5 (41-240)||(24137293-24137488)
chr5 (40-207)||(11320640-11320803)
[»] chr8 (3 HSPs)
chr8 (43-252)||(20242408-20242616)
chr8 (43-252)||(20250544-20250752)
chr8 (41-99)||(5616763-5616820)
[»] scaffold0007 (1 HSPs)
scaffold0007 (40-240)||(14472-14668)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 106 - 464
Target Start/End: Original strand, 9047926 - 9048282
Alignment:
Q  106 aaaaccaatgaaaagcagcaaccaaccaaagtgagttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9047926 aaaaccaatgaaaagcagcaaccaaccaaagtgagttatcttcgtagag--agcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaa 9048023  T
Q  206 caatagaatcagtagagagaagcagccatacataaaaattaatagaggagtaaccaaaaaatcatcaaaagtggaataactacgatcagaaaacatgaat 305  Q
    |||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||| | | |||| | |||| || ||||||||    
T  9048024 caatagaatcagtagagaaaaggagtcatacataagaattaatagaggagtaaccaaaaaatcatcaaaagtagtagaactgcaatcaaaagacatgaat 9048123  T
Q  306 aatattctcattaattaatgaatgagtgtgaattacaagttacaacttatatagtctctaagaggattctcccgtttgccgcctctagagagaacataca 405  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9048124 aatattctcattaattaacgaatgagtgtgaattacaagttacaacttatatagtctctaagagaattctcccgtttgccgcctctagagagaacataca 9048223  T
Q  406 tacatgaatgatgaatatcaatatcatgcatgtcaaaaagatcacagtatatataaaat 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9048224 tacatgaatgatgaatatcaatatcatgcatgtcaaaaagatcacagtatatataaaat 9048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 40 - 279
Target Start/End: Complemental strand, 8986819 - 8986581
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    ||||||||||||||||||  ||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||| | |    
T  8986819 gaagcttactaagctttaagcttgttacaaattaaccaagaaaaataaaccaaatcagctgtcagcaaacccaatggagagcagcaacaaaccaaactta 8986720  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaa--aaagagaaccatccaaacaatagaatcagtagagagaagcagccataca 237  Q
    |||||||| ||  |||||||||||  |||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  8986719 gttatctttgt--agagagcagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccataca 8986622  T
Q  238 taaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    ||| ||  |||||||||| ||||||| |||||||||||||||    
T  8986621 taagaaccaatagaggag-aaccaaagaatcatcaaaagtgg 8986581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 32291046 - 32290862
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    ||||||||||||||||||  ||||| || |||||||  ||||||||||||  |||||||||| |||||| ||| || | ||||||||| ||    |||||    
T  32291046 gaagcttactaagctttaagcttgttaccaattaacctagaaaaataaactgaatcagctgttagcaaa-ccattggagagcagcaactaa----agtga 32290952  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagca 229  Q
    ||||| ||||||||||||||||||  || ||||| ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  32290951 gttattttcgtagagagagcagcaagaatcatcatcatcaaccaatcaaagagagaaccatccaaacaaaagaaccagtagagagaagca 32290862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 38583709 - 38583900
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaa-taaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtg 138  Q
    |||||||||||||||||| |||||| |||||||||  || ||||| ||||||||||||||||  || | ||||||| || |||||||||    |||||||    
T  38583709 gaagcttactaagcttta-acttgttacaaattaatccaaaaaaaataaaccaaatcagctggtagaagaaccaattaagagcagcaac----caaagtg 38583803  T
Q  139 agttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccata 235  Q
    ||||||||||  |||||||||||||  |||||  |||| ||||||||| || ||| |||||||||||||| ||||  |||||||||||| |||||||    
T  38583804 agttatcttcacagagagagcagcaagaaccactaccaccaaccaatccaatagaaaaccatccaaacaaaagaacaagtagagagaagtagccata 38583900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 1172980 - 1173099
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    |||||||||  |||||||   |||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||| | |||||    ||| ||||||||    
T  1172980 gaagcttacggagctttaagtttgttacaaattaacccagaaaaatcaaccaaatcagctgttagcaaaaccaatggagagcag----caatcaaagtga 1173075  T
Q  140 gttatcttcgtagagagagcagca 163  Q
    ||||||||||||||||||||||||    
T  1173076 gttatcttcgtagagagagcagca 1173099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 1173132 - 1173196
Alignment:
Q  217 gtagagagaagcagccatacataaaaattaatagaggagtaaccaaaaaatcatcaaaagtggaa 281  Q
    |||||||||||||| |||||| || ||  |||||||||| ||||||| |||||||||||||||||    
T  1173132 gtagagagaagcagtcatacaaaagaaccaatagaggagcaaccaaagaatcatcaaaagtggaa 1173196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 20593664 - 20593778
Alignment:
Q  80 aaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagttatcttcgtagagagag--cagcataaaccatcaccat 177  Q
    |||||||||||||||||||||  || | || ||| ||| |||||    |||||||||||||||||| || |||||||||  ||| |  ||||||||||||    
T  20593664 aaaaataaaccaaatcagctgatagtagaatcaacgaagagcag----caaccaaagtgagttatcatcatagagagagaccagtaagaaccatcaccat 20593759  T
Q  178 caaccaatcaaaaagagaa 196  Q
    ||||||  |||| ||||||    
T  20593760 caaccagccaaagagagaa 20593778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 8e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 40 - 277
Target Start/End: Original strand, 15629570 - 15629807
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  15629570 gaagcttactaagctttaagcttgttacaaattaactcagaaaaataaactaaatcagttgtcagcaaaaccaatggagaacagcaaccaaccaaagtga 15629669  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacata 239  Q
    |||||||||| |||||||||||||  |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  15629670 gttatcttcgcagagagagcagcaagaaccatcatcatcaaccaatcaaagagagaaccatccaaaaaatagaaccagtagagagatgcaaccatacata 15629769  T
Q  240 aaaattaatagaggagtaaccaaaaaatcatcaaaagt 277  Q
    | ||  ||||||||||||||||||||||||||||||||    
T  15629770 agaaccaatagaggagtaaccaaaaaatcatcaaaagt 15629807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 9167991 - 9168152
Alignment:
Q  85 taaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagttatcttcgtagagagagcagcataaaccatcaccatcaaccaa 184  Q
    ||||| |||| || ||| ||||||||||||| | |||||||||    ||||||||||||||||| ||||||||||| ||  |||||||||||| |||||     
T  9167991 taaacaaaattagttgttagcaaaaccaatggagagcagcaac----caaagtgagttatcttcatagagagagcatcaagaaccatcaccattaaccag 9168086  T
Q  185 tcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacataaaaattaatag 250  Q
    ||||| ||| || ||||||||||| |||| ||||||||||||| |||||||||||| ||| |||||    
T  9168087 tcaaagagaaaatcatccaaacaaaagaaccagtagagagaagtagccatacataagaatcaatag 9168152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 3774536 - 3774591
Alignment:
Q  41 aagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatca 96  Q
    |||||||||||||||||  ||||| |||||||||| ||||||||||||||| ||||    
T  3774536 aagcttactaagctttatgcttgttacaaattaacccagaaaaataaaccatatca 3774591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 11993481 - 11993412
Alignment:
Q  81 aaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagttatcttcgtagag 154  Q
    ||||||||||||||||||||  |||| |||||||||| |||    | |||||||||||||||||| ||||||||    
T  11993481 aaaataaaccaaatcagctgatagcataaccaatgaagagc----atcaaccaaagtgagttatcatcgtagag 11993412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 50296178 - 50295937
Alignment:
Q  38 ccgaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagt 137  Q
    ||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||| || ||||| ||||||||||  | || |||||||||||||| |    
T  50296178 ccgaagcttactaagctttaggcttgttacaaattaacccataaaaataaaccaaattagttgtcaccaaaaccaatagagagtagcaaccaaccaaact 50296079  T
Q  138 gagttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccataca 237  Q
     ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  50296078 tagttatcttcgtagagagagcagcaaaaaccatcatcatcaaccaatcaaagagagaaccatccaaacaatagaaccagtatagagaagcagccataca 50295979  T
Q  238 taaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    ||| ||  |||||| ||||||||||| |||||||||||||||    
T  50295978 taagaaccaatagaagagtaaccaaagaatcatcaaaagtgg 50295937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 92 - 279
Target Start/End: Original strand, 46691712 - 46691900
Alignment:
Q  92 aatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaa 191  Q
    |||||||||||||||||||||||| | |||| |||||| ||||||||||||||||| |||||||||||||||  |||||||| ||||||||||||||| |    
T  46691712 aatcagctgtcagcaaaaccaatggagagcaacaaccagccaaagtgagttatctttgtagagagagcagcaataaccatcaacatcaaccaatcaaata 46691811  T
Q  192 gagaaccatccaaacaatagaatcagtagagagaag--cagccatacataaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    |||||||||||||||||||||| || ||||||||||  ||  |||| |||| ||  |||||||||||||||||| |||||||||||||||    
T  46691812 gagaaccatccaaacaatagaaccaatagagagaaggtcatacata-ataagaaccaatagaggagtaaccaaagaatcatcaaaagtgg 46691900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 42531187 - 42531107
Alignment:
Q  35 aaaccgaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatg 115  Q
    |||| |||||||||||||||||| ||| || | | |||||  ||||||||||||||||||||| |||||||||||||||||    
T  42531187 aaactgaagcttactaagctttaaactagttatagattaatccagaaaaataaaccaaatcaggtgtcagcaaaaccaatg 42531107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 42531091 - 42531029
Alignment:
Q  217 gtagagagaagcagccatacataaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||| |||||| ||||||||    
T  42531091 gtagagagaagcagtcatacataaaaaccaatataggagtaaccaaagaatcattaaaagtgg 42531029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 22821079 - 22821136
Alignment:
Q  41 aagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagct 99  Q
    |||| |||||||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  22821079 aagcctactaagctttaaacttgttacaaattaaccca-aaaaataaaccaaatcagct 22821136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 40 - 279
Target Start/End: Original strand, 46963283 - 46963521
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    |||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| | |    
T  46963283 gaagcttactaagctttaaacttgttacaaattaaccaagaaaaataaaccaaatcagctgtcagcaaaaccaatggagagcagcaacaaaccaaactta 46963382  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaa--aaagagaaccatccaaacaatagaatcagtagagagaagcagccataca 237  Q
    |||||||| ||  |||||||||||  |||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  46963383 gttatctttgt--agagagcagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccataca 46963480  T
Q  238 taaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    ||| ||  |||||||||| ||||||| |||||||||||||||    
T  46963481 taagaaccaatagaggag-aaccaaagaatcatcaaaagtgg 46963521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 44338939 - 44338731
Alignment:
Q  43 gcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagtt 142  Q
    |||||||||||||||  | | | |||||||||   |||||||||||||||||||||||| |||| |||||||||| ||||||||||||    ||||||||    
T  44338939 gcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagctgttagcagaaccaatgaagagcagcaaccaa----agtgagtt 44338844  T
Q  143 atcttcgtagagagagcagcataaa---ccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacata 239  Q
    ||||| |||||||||||||||  ||   |||  |||| ||| || ||||| |||||||||||||||||| ||||||| |||||| ||  ||||| |||||    
T  44338843 atctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatccaaacaaaagaatcaatagagataactagccacacata 44338744  T
Q  240 aaaattaatagag 252  Q
    ||||  |||||||    
T  44338743 aaaaccaatagag 44338731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 15614469 - 15614585
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    ||||||||||||| ||||  ||||| | |||||||| ||||||||||||||||||| | ||| ||||||||||||| | |||    | ||||||||||||    
T  15614469 gaagcttactaagttttaagcttgttaaaaattaacccagaaaaataaaccaaatctgttgttagcaaaaccaatggagagc----atcaaccaaagtga 15614564  T
Q  140 gttatcttcgtagagagagca 160  Q
    |||||||||||||||||||||    
T  15614565 gttatcttcgtagagagagca 15614585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 3902133 - 3902045
Alignment:
Q  41 aagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaa 130  Q
    |||||| |||||||||| |||||| ||||||||||  | |||||||||||| ||||||||  | ||||||||||||| ||||||||||||    
T  3902133 aagcttgctaagctttaaacttgttacaaattaaccga-aaaaataaaccagatcagctgatatcaaaaccaatgaagagcagcaaccaa 3902045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 3889634 - 3889498
Alignment:
Q  48 ctaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagttatctt 147  Q
    |||||||||| |||| | |||||||||| || ||||||||||||||||| | |  | ||||||||||||| ||||||||||||    ||||| ||||| |    
T  3889634 ctaagctttaaacttattacaaattaaccca-aaaaataaaccaaatcaaccgatatcaaaaccaatgaagagcagcaaccaa----agtgaattatcat 3889540  T
Q  148 cgtagagagagcagcataaaccatcaccatcaaccaatcaaa 189  Q
      ||||||||||| ||  ||  ||||||||||||||| ||||    
T  3889539 aatagagagagcaacaagaataatcaccatcaaccaaccaaa 3889498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 26403348 - 26403269
Alignment:
Q  128 caaccaaagtgagttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaaca 207  Q
    |||||||||| ||||||| |||||||||||| ||||  || ||| ||||||||||| | ||| ||||||||||| |||||    
T  26403348 caaccaaagttagttatcatcgtagagagagtagcaagaatcattaccatcaaccagttaaatagagaaccatctaaaca 26403269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 3890090 - 3890003
Alignment:
Q  41 aagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaa 130  Q
    ||||||||||||||||| |||||| |||||||||| || |||||||||||||||||  ||  | |||||| |||||| |||| |||||||    
T  3890090 aagcttactaagctttaaacttgttacaaattaac-ca-aaaaataaaccaaatcaaatgatatcaaaactaatgaagagcaacaaccaa 3890003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 15614589 - 15614649
Alignment:
Q  219 agagagaagcagccatacataaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    |||||||||||| ||||||||| ||  |||||||| ||||||||| |||||||| ||||||    
T  15614589 agagagaagcagtcatacataagaaccaatagaggcgtaaccaaagaatcatcacaagtgg 15614649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 8736838 - 8736881
Alignment:
Q  300 atgaataatattctcattaattaatgaatgagtgtgaattacaa 343  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  8736838 atgaataatattctcattaattgatgaatgagtgtagattacaa 8736881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 3889346 - 3889296
Alignment:
Q  80 aaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaa 130  Q
    |||||||||||||||||||||  | ||||||||||||| || |||||||||    
T  3889346 aaaaataaaccaaatcagctgataccaaaaccaatgaagagtagcaaccaa 3889296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 40 - 279
Target Start/End: Complemental strand, 16871543 - 16871305
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    |||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| | |    
T  16871543 gaagcttactaagctttaaacttgttacaaattaaccaagaaaaataaaccaaatcagctgtcagcaaaaccaatggagagcagcaacaaaccaaactta 16871444  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaa--aaagagaaccatccaaacaatagaatcagtagagagaagcagccataca 237  Q
    |||||||| ||  ||||| |||||  |||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  16871443 gttatctttgt--agagaacagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccataca 16871346  T
Q  238 taaaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    ||| ||  |||||||||| ||||||| |||||||||||||||    
T  16871345 taagaaccaatagaggag-aaccaaagaatcatcaaaagtgg 16871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 40 - 279
Target Start/End: Original strand, 9290859 - 9291098
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    |||| |||| ||||||||  ||||| ||||||||||  | ||||||||||||||||| || ||||||||||||||| | || ||||||||||||||||||    
T  9290859 gaagtttaccaagctttaagcttgttacaaattaacctaaaaaaataaaccaaatcaactatcagcaaaaccaatggagagaagcaaccaaccaaagtga 9290958  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacata 239  Q
    ||||| |||||||||||| || ||  |||||||| ||||||||||||||| ||||||| ||||||| ||||||| ||||| ||||||||| |||||||||    
T  9290959 gttatgttcgtagagagatcaacaagaaccatcatcatcaaccaatcaaagagagaacaatccaaataatagaaccagtatagagaagcaaccatacata 9291058  T
Q  240 aaaattaatagaggagtaaccaaaaaatcatcaaaagtgg 279  Q
    | ||  ||||||| |||||||||| |||||||||||||||    
T  9291059 acaaccaatagagaagtaaccaaagaatcatcaaaagtgg 9291098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 18984335 - 18984226
Alignment:
Q  128 caaccaaagtgagttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaag 227  Q
    ||||||||||||| || |||||||||||||||||||  |||||  |||| |||||| ||||| |||||||||||||||||| |||| | ||||||| ||     
T  18984335 caaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataac 18984236  T
Q  228 cagccataca 237  Q
     |||||||||    
T  18984235 tagccataca 18984226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 28063218 - 28063308
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaa 130  Q
    |||| |||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||  |||| |||||||  | ||||||||||||    
T  28063218 gaagtttactaagctttaagcttgttacaaattaacccagaaaaataaaccaaatcagctgatagcataaccaatagagagcagcaaccaa 28063308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 21862457 - 21862382
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatg 115  Q
    ||||| |||||| |||||  ||||| ||||||||||  ||||| |||||||||||||||||| |||||||||||||    
T  21862457 gaagcatactaaactttaagcttgttacaaattaacctagaaatataaaccaaatcagctgttagcaaaaccaatg 21862382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 10741661 - 10741605
Alignment:
Q  170 atcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaag 227  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||  |||||||||    
T  10741661 atcaccatcaaccaatcaaaaagagaatcat-caaacaatagaaccaacagagagaag 10741605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 24137488 - 24137293
Alignment:
Q  41 aagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgag 140  Q
    |||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||  |||| |||||||||| ||||||||||||    | ||||    
T  24137488 aagcttactaagctttaagcttgttacaaattaacccagaaaaataaaccaaatcagctgctagcagaaccaatgaagagcagcaaccaa----aatgag 24137393  T
Q  141 ttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacataa 240  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  24137392 ttatcttcatagagagagcagcaagaaccatcaccatcaaccaatcaaatagagaaccatccaaacaatagaaccattagagagaagcagtcatacataa 24137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 11320640 - 11320803
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||||| ||||||||| |  |||| ||| | || | |||| ||||    ||||||||    
T  11320640 gaagcttactaagctttaagcttgttacaaattaacccaaaaaaataaatcaaatcagcggctagcagaactagtggagagcaacaac----caaagtga 11320735  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaaca 207  Q
    |||||| ||  |||||| ||| ||   ||||||||||||||||| ||||| ||||||||||| |||||    
T  11320736 gttatcatcaaagagagggcaacaagcaccatcaccatcaaccactcaaagagagaaccatctaaaca 11320803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 20242616 - 20242408
Alignment:
Q  43 gcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagtt 142  Q
    |||||||||||||||  | | | |||||||||   |||||||||||||||||||||||| |||| |||||||||| ||||||||||||    ||||||||    
T  20242616 gcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagctgttagcagaaccaatgaagagcagcaaccaa----agtgagtt 20242521  T
Q  143 atcttcgtagagagagcagcataaa---ccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacata 239  Q
    ||||| |||||||||||||||  ||   |||  |||| ||| || ||||| |||||||||||||||||| ||||||| |||||| ||  ||||| |||||    
T  20242520 atctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatccaaacaaaagaatcaatagagataactagccacacata 20242421  T
Q  240 aaaattaatagag 252  Q
    ||||  |||||||    
T  20242420 aaaaccaatagag 20242408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 20250544 - 20250752
Alignment:
Q  43 gcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtgagtt 142  Q
    |||||||||||||||  | | | |||||||||   |||||||||||||||||||||||| |||| |||||||||| ||||||||||||    ||||||||    
T  20250544 gcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagctgttagcagaaccaatgaagagcagcaaccaa----agtgagtt 20250639  T
Q  143 atcttcgtagagagagcagcataaa---ccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacata 239  Q
    ||||| |||||||||||||||  ||   |||  |||| ||| || ||||| |||||||||||||||||| ||||||| |||||| ||  ||||| |||||    
T  20250640 atctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatccaaacaaaagaatcaatagagataactagccacacata 20250739  T
Q  240 aaaattaatagag 252  Q
    ||||  |||||||    
T  20250740 aaaaccaatagag 20250752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 5616820 - 5616763
Alignment:
Q  41 aagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagct 99  Q
    |||| |||||||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  5616820 aagcctactaagctttaaacttgttacaaattaaccca-aaaaataaaccaaatcagct 5616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 14472 - 14668
Alignment:
Q  40 gaagcttactaagctttagacttgtaacaaattaactcagaaaaataaaccaaatcagctgtcagcaaaaccaatgaaaagcagcaaccaaccaaagtga 139  Q
    ||||||||||||||||||  ||||| ||||||| ||  || |||||||| |||||||||||| |  | ||||||| || |||||||||    ||||||||    
T  14472 gaagcttactaagctttaagcttgttacaaattgaccgaggaaaataaatcaaatcagctgttaaaagaaccaataaagagcagcaac----caaagtga 14567  T
Q  140 gttatcttcgtagagagagcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagagaagcagccatacata 239  Q
    | || |||||||||||||||||||  |||||  |||| |||||| ||||| |||||||||||||||||| |||| | ||||||| ||  |||||||||||    
T  14568 gctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataactagccatacata 14667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University