View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13605_low_4 (Length: 480)
Name: NF13605_low_4
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13605_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 64 - 462
Target Start/End: Original strand, 50111801 - 50112198
Alignment:
| Q |
64 |
gtatgaccaactgcattctgaaatgcatttatgtacaccatggatatgttcaagtttgtcgaaataacagtgtgtcaccctgatttcggtacactttaaa |
163 |
Q |
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| T |
50111801 |
gtatgaccaactgcattctgaaatgcatttatgtacaccatggatatgttcaagtttgtcgaaatcacagtgtgtcaccctgatttcggtacactttaaa |
50111900 |
T |
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| Q |
164 |
gctcggttttaattcatactaattaaaatagtaaaattgaatatgcaatgcaatgcagcacagtgatatgatataaagaggctgtgaaaagtgaatcata |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
50111901 |
gctcggttttaattcatactaattaaaatagtaaaattgaatatgcaatgcaatgcagcacagtgatatgatataa-gaggttgtgaaaagtgaatcata |
50111999 |
T |
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| Q |
264 |
ccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaaaaatcaa |
363 |
Q |
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| T |
50112000 |
ccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaaaaatcaa |
50112099 |
T |
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| Q |
364 |
gtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgtgcattaggcttgc |
462 |
Q |
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| T |
50112100 |
gtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatgtgcattaggcttgc |
50112198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 247 - 453
Target Start/End: Original strand, 50121564 - 50121770
Alignment:
| Q |
247 |
gtgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgc |
346 |
Q |
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| T |
50121564 |
gtgaaaagtgaatcataccaaaagcccaataaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacattcagaggcgtaggtcctgc |
50121663 |
T |
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| Q |
347 |
aaagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacacca |
446 |
Q |
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| T |
50121664 |
aaagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacacca |
50121763 |
T |
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| Q |
447 |
tgtgcat |
453 |
Q |
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| T |
50121764 |
tgtgcat |
50121770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 452
Target Start/End: Complemental strand, 23931210 - 23931015
Alignment:
| Q |
257 |
aatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaa |
356 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||| || | || ||||||||||| ||| | | ||| || ||||| | ||||||||| |
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| T |
23931210 |
aatcataccaaaagcccagtaaggcatagcagctggtcttccaatcaaagtagtatactgatcaaccacattcaaaggagttggtccagagaagaagtaa |
23931111 |
T |
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| Q |
357 |
aaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgtgca |
452 |
Q |
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||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| ||||||||||| | |||| |||||||| |
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| T |
23931110 |
aaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcatgtgca |
23931015 |
T |
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