View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13605_low_5 (Length: 477)
Name: NF13605_low_5
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13605_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 41784923 - 41785382
Alignment:
| Q |
1 |
tcgaattggaaactcaaatcaatcagagaaatgagttggaagagcagttaagagatacaaattatgagattaaacaactgatgaatgaaaataaggccct |
100 |
Q |
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| T |
41784923 |
tcgaattggaaactcaaatcaatcagagaaatgagttggaagagcagttaagagatacaaattatgagattaaacaactgatgaatgaaaataaggccct |
41785022 |
T |
|
| Q |
101 |
gcaggatagaaaccatgaactgaaagcagcaatgatacaaagaggtgaagagatatcaaattttttaaaggaaaacgatagcgatgaaaatggagcttca |
200 |
Q |
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| T |
41785023 |
gcaggatagaaaccatgaactgaaagcagcaatgatacaaagaggtgaagagatatcaaattttttaaaggaaaacgatagcgatgaaaatggagcttca |
41785122 |
T |
|
| Q |
201 |
atggagatcatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttggaactccagaatgagcgaa |
300 |
Q |
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| T |
41785123 |
attgagattatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttggaactccagaatgagcgaa |
41785222 |
T |
|
| Q |
301 |
accagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaaaactataaaggatcagac |
400 |
Q |
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| T |
41785223 |
accagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaaaactataaaggatcagac |
41785322 |
T |
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| Q |
401 |
atcaacaattgaccgaataaatgcggagcaaaaacaaaccataatcacctcgaataaact |
460 |
Q |
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| T |
41785323 |
atcaaccattgaccgaataaatgcggagcaaaaacaaaccataatcacctcgaataaact |
41785382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 173 - 447
Target Start/End: Original strand, 10834316 - 10834588
Alignment:
| Q |
173 |
aaacgatagcgatgaaaatggagcttcaatggagatcatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaa |
272 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| || || || ||||| |||| |||| |
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| T |
10834316 |
aaacgatagcgacgaaaatggagcttcgatggagatcatggctttaaaagctgaagttaatgacatgggactagatttcgataacttgcatgaac-taaa |
10834414 |
T |
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| Q |
273 |
accaagttggaactccagaatgagcgaaaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctg |
372 |
Q |
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| |||||| || ||| |||||||||||||||||| | ||||| |||||| | |||||| | |||| ||| | ||||||||| || ||||||||||| |
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| T |
10834415 |
atcaagttcgagctctcaaatgagcgaaaccagaagcagtatgctgaaagcctggcaaaggtggaaaatttaaccacaaagtttgcaacccagatagctg |
10834514 |
T |
|
| Q |
373 |
atcaagagaaaactataaaggatcagacatcaacaattgaccgaataaatgcggagcaaaaacaaaccataatca |
447 |
Q |
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||| ||||| |||||||| |||||| || |||| ||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
10834515 |
atc-agagataactataatggatcaagcaccaaccattgaccaaataaatgtggaccaaaaacaaaccataatca |
10834588 |
T |
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