View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13605_low_8 (Length: 294)
Name: NF13605_low_8
Description: NF13605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13605_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 47894405 - 47894150
Alignment:
| Q |
17 |
aacaacaccatcgtttgagttcaacctaccaaatttcgcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894405 |
aacaacaccatcgtttgagttcaacctaccaaatttctcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatag |
47894306 |
T |
|
| Q |
117 |
tttgatggaagactcaaaaaaccacctcgtgg------------------agaacccatcttagacaccggactccattcatcaaccctaacactcctca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894305 |
tttgatggaagactcaaaaaaccacctcgtggtcgtggagaaccaaacacagaacccatcttagacaccggactccattcatcaaccctaacactcctca |
47894206 |
T |
|
| Q |
199 |
tgaagccaactaattccctcacgttcaccggtgggacaccgtatcgagattttctt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894205 |
tgaagccaactaattccctcacgttcaccggtgggacaccgtatcgagattttctt |
47894150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University