View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13606_low_1 (Length: 586)
Name: NF13606_low_1
Description: NF13606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13606_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 38905732 - 38905505
Alignment:
| Q |
13 |
tcatcaaatgccctgtaactgatttatcacaaattatggaaaatatttgcacattgaaagtatatcaactggaccaataaaattattcttattcttaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38905732 |
tcatcaaatgccctgtaactgatttatcacaaattatggaaaatatttgcacattgaaagtatatcaactggaccaataaaattattcttattcttaaca |
38905633 |
T |
|
| Q |
113 |
acaagatgcattgtattaatggatacaaagttttgaaggctcctttgccgatcacttctttgtactgttacagatgcaaaaagcagaattagcttattgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38905632 |
acaagatgcattgtattaatggatacaaagttttgaaggctcctttcccgatcacttctttgtactgttacagatgcaaaaagcagaattagcttattgc |
38905533 |
T |
|
| Q |
213 |
attgtaaggttattgtttattttaacat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38905532 |
attgtaaggttattgtttattttaacat |
38905505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 238 - 441
Target Start/End: Complemental strand, 38905479 - 38905276
Alignment:
| Q |
238 |
cataggcaattgcattaccttgatgtaacgagaagtagaatcaatttcgagaacatcgggatcaggtggctctgaatgccctccaccctcttccgagctt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38905479 |
cataggcaattgcattaccttgatgtaacgagaagtagaatcaatttcgagaacatcgggatcaggtggctctgaatgccctccaccctcttccgagctt |
38905380 |
T |
|
| Q |
338 |
tccatacaagccaaactcatctatatacaaatcaaagtagttgacaaacaacatcaatttgataccgccattagaaacaaaatcatcaacacacaatgat |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38905379 |
tccatacaagccaaactcatctatatacaaatcaaagtagttgacaaacaacatcaatttgataccgccattagaaacaaaatcatcaacacacaatgat |
38905280 |
T |
|
| Q |
438 |
caaa |
441 |
Q |
| |
|
|||| |
|
|
| T |
38905279 |
caaa |
38905276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 441 - 567
Target Start/End: Complemental strand, 38905253 - 38905127
Alignment:
| Q |
441 |
agtagtatttataattgagaggatcaatgtattaaattctattcaacaactataatttgagcttcaattttattaattttttctgtttttacctgaaaat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38905253 |
agtagtatttataattgagaggatcaatgtattaaattctattcaacaactataatttgagcttcaattttattaattttttctgtttttacctgaaaat |
38905154 |
T |
|
| Q |
541 |
caagctcctgtgagctcacgataaaga |
567 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
38905153 |
caagctcctgtgagctcacgatgaaga |
38905127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University