View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13606_low_2 (Length: 452)
Name: NF13606_low_2
Description: NF13606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13606_low_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 320 - 452
Target Start/End: Complemental strand, 50295127 - 50294995
Alignment:
| Q |
320 |
attcacgtgccaccaccaaataattatccatcactcaaccaattcaatttatttattttaatctaattcaaatgtcacaacaccaaagaagcagaagcaa |
419 |
Q |
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| T |
50295127 |
attcacgtgccaccaccaaataattatccatcactcaaccaattcaatttatttattttaatataattcaaacgtcacaacaccaaagaagcagaagcaa |
50295028 |
T |
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| Q |
420 |
gccacgaaccaaaggacacaacaatgataacaa |
452 |
Q |
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| T |
50295027 |
gccacgaaccaaaggacacaacaatgataacaa |
50294995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 50295222 - 50295102
Alignment:
| Q |
186 |
ctaacccaaacaatagccaaataagccacatcaacatgctaat----aaccaaataaggcacttctgcaatccaattagcatttgggttgaaaccattca |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50295222 |
ctaacccaaacaatagccaaataagccacatcaacatgctaattaataaccaaataaggcacttctacaatccaattagcatttgggttgaaaccattca |
50295123 |
T |
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| Q |
282 |
cgtgccatcaccaaataatta |
302 |
Q |
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| T |
50295122 |
cgtgccaccaccaaataatta |
50295102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 50295398 - 50295360
Alignment:
| Q |
10 |
cgaagaaaatcaaacgaatcaagacaagctgaaccaaag |
48 |
Q |
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| T |
50295398 |
cgaacaaaatcaaacgaatcaagacaagctgaaccaaag |
50295360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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