View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13606_low_4 (Length: 253)
Name: NF13606_low_4
Description: NF13606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13606_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 50295005 - 50294768
Alignment:
| Q |
1 |
aatgataacaacgaaatccacacaactaaacataggaacatgttggtgacacagacatcaaacaaagggacaatcgacgaacacatgacaaacaaaacat |
100 |
Q |
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| T |
50295005 |
aatgataacaactaaatccacacaactcaacataggaacatgttggtgacacaaacatcaaacaaagggacaatcaacgaacacatgacaaacaaaacat |
50294906 |
T |
|
| Q |
101 |
actcccaaacttttgggattcgacagcggaagcgacaagtagtttaaggtgaatcgaaacaagctttagataccatgttaacaatattgagtttcaataa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50294905 |
actcccaaacttttgagattcgacagcggaagcgacaagtagtttaaggtggatcgaaacaagctttagatatcatgttaacaatattgagtttcaataa |
50294806 |
T |
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| Q |
201 |
gaaataataaagagatggttagggtttccaataatatt |
238 |
Q |
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| T |
50294805 |
gaaataataaagagacaactagggtttccaataatatt |
50294768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 50297633 - 50297572
Alignment:
| Q |
175 |
atgttaacaatattgagtttcaataagaaataataaagagatggttagggtttccaataatatt |
238 |
Q |
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| T |
50297633 |
atgttaacaatattgggtttcaataagaaataat--agagacggttaggatttccaataatatt |
50297572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 54146866 - 54146783
Alignment:
| Q |
103 |
tcccaaacttttgggattcgacagcggaagcgacaagtagtttaaggtgaatcgaaacaagctttagataccatgttaacaata |
186 |
Q |
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| T |
54146866 |
tcccaaacttttgggattcgacagcggaagcgacaagcggttcaaggcggatcaaaacaagttctagatatcatgttaacaata |
54146783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 3774254 - 3774325
Alignment:
| Q |
169 |
gataccatgttaacaatattgagtttcaataagaaataataaagagatggttagggtttccaataatattga |
240 |
Q |
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| T |
3774254 |
gataccatattaacaatattatgtttcaataagaagtaacaaagagagggctagggtttccaataatattga |
3774325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 22552506 - 22552562
Alignment:
| Q |
178 |
ttaacaatattgagtttcaataagaaataataaagagatggttagggtttccaataa |
234 |
Q |
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| T |
22552506 |
ttaacaatattgagtttcaataagaaataagaaagagacggctagggttttcaataa |
22552562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 3950714 - 3950616
Alignment:
| Q |
89 |
caaacaaaacatactcccaaacttttgggattcgacagcggaagcgacaagtagtttaaggtgaatcgaaacaagctttagataccatgttaacaatat |
187 |
Q |
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| T |
3950714 |
caaaccaaatatattctcaaacttttgagattcgatagcagaagtgacaagtggttcaaggcggatcaaaccatgctttcgataccatgttaacaatat |
3950616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 28064545 - 28064605
Alignment:
| Q |
125 |
agcggaagcgacaagtagtttaaggtgaatcgaaacaagctttagataccatgttaacaatat |
187 |
Q |
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| T |
28064545 |
agcggaagcaacaagcagtttaaggtggatcaaaacaagctct--ataccatgttaacaatat |
28064605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 1175437 - 1175470
Alignment:
| Q |
103 |
tcccaaacttttgggattcgacagcggaagcgac |
136 |
Q |
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| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgac |
1175470 |
T |
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