View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13607_high_2 (Length: 398)
Name: NF13607_high_2
Description: NF13607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13607_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 44041539 - 44041150
Alignment:
| Q |
9 |
caaaggtaaaatttggagctgaggaatcaatagtccaaatctacaaaaacagtaaattggtacaaaatgttagttaatgattttgaaacatgtagtaaga |
108 |
Q |
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| T |
44041539 |
caaaggtaaaatttggagctgaggaatcaatagtccaaatctacaaaaacagtaaattggtacaaaatgttagttaatgattttgaaatatgtagtaaga |
44041440 |
T |
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| Q |
109 |
agcagggttttagaaagttgcatcaacaagatttgatcccgacactccacaataatatcgaggattatgacgctagccttgagcccttgaccataagaat |
208 |
Q |
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| T |
44041439 |
agcagggttttagaaagttgcatcaacaagatttgatcccgacactccacaattatatcgaggatcatcacgctagccttgagcccttgaccatacgaat |
44041340 |
T |
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| Q |
209 |
tacagttgaggattttcggttaagatacctttaaagttccatcgagggatgcactggcaaaggtagatggatccttgggattaaatgccacttgcatcac |
308 |
Q |
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| T |
44041339 |
tacagttgaggattttcggttaagatacctttaaagttccatcgagggatgcactggcaaaggtagatggatccttgggattaaatgccacttgcataac |
44041240 |
T |
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| Q |
309 |
ataatgtgagttcccttcaaaagtctcatcacaagaccaacctttcttccaattccacaacttcaagacttgatcatcagaagccgatac |
398 |
Q |
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| T |
44041239 |
ataatgtgagttcccttcaaaagtctcatcacaagaccaaccttttttccaattccacaacttcaagacttgatcatcagaagccgatac |
44041150 |
T |
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