View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13607_high_5 (Length: 227)
Name: NF13607_high_5
Description: NF13607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13607_high_5 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20195834 - 20195608
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggccttaagtggctggcagtaaacgaaagatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20195834 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcattagattaagaaggccttaagtggccggcagtaaacgaaagatgt |
20195735 |
T |
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| Q |
101 |
aaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20195734 |
aaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatga |
20195635 |
T |
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| Q |
201 |
ttctacaaagtaggggttactcaacac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
20195634 |
ttctacaaagtaggggttactcaacac |
20195608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22089857 - 22089631
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggccttaagtggctggcagtaaacgaaagatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22089857 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcattagattaagaaggccttaagtggccggcagtaaacgaaagatgt |
22089758 |
T |
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| Q |
101 |
aaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatga |
200 |
Q |
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| T |
22089757 |
aaagaaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatga |
22089658 |
T |
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| Q |
201 |
ttctacaaagtaggggttactcaacac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22089657 |
ttctacaaagtaggggttactcaacac |
22089631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20246180 - 20246110
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggcc |
71 |
Q |
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|||| ||||| ||| ||| ||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
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| T |
20246180 |
tcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggtatatgagattaagaaggcc |
20246110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22140164 - 22140094
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggcc |
71 |
Q |
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|||| ||||| ||| ||| ||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
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| T |
22140164 |
tcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggtatatgagattaagaaggcc |
22140094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 224077 - 223986
Alignment:
| Q |
105 |
aaaaagatcattgaagagggacaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcat |
196 |
Q |
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|||||| |||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
224077 |
aaaaagctcattgaagaggaacaaaatgtcatccctgttgaaaccctcactggccaacaccctcagcatgatcagaaaatatgtggcttcat |
223986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17019808 - 17019723
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggccttaagtggctggcagt |
87 |
Q |
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|||||||||| ||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17019808 |
tcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggcctt-agtggctggcagt |
17019723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11885883 - 11885956
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggcctta |
74 |
Q |
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|||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
11885883 |
tcatcacatctaagaaaaatgcatagaacaaaatcacggttgtttagccggagcatgagatcaagaaggcctta |
11885956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 11886955 - 11887057
Alignment:
| Q |
125 |
acaaaacgtggtccctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcatatgattctacaaagtaggggttactcaa |
224 |
Q |
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||||||||| |||||| | |||||| || | ||| |||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| || |
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| T |
11886955 |
acaaaacgtcgtccctatcgaaaccttcgccggctaacaccctcagcatgatcagaaaatatgtggcttcatctgactctgcaaagtaggcattacttaa |
11887054 |
T |
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| Q |
225 |
cac |
227 |
Q |
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||| |
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| T |
11887055 |
cac |
11887057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 17988887 - 17988830
Alignment:
| Q |
139 |
ctgttgaaaccctcactggccgacaccctcagcatgatcataaaatatgtggcttcat |
196 |
Q |
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|||| ||||||||| || ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
17988887 |
ctgtcgaaaccctcgctagccaacaccctcagcatgatcaaaaaatatgtggcttcat |
17988830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25579051 - 25578954
Alignment:
| Q |
1 |
tcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagcatgagattaagaaggccttaagtggctggcagtaaacgaaagatg |
99 |
Q |
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|||||||||| | | ||||||||| ||| |||| || |||||||||||| ||| |||||||||| |||||| | ||||| ||||||| ||| ||||||| |
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| T |
25579051 |
tcatcacatctatgcaaaatgcttggagcaaaaccacggttgtttagccagagtatgagattaaaaaggccat-agtggttggcagttaacaaaagatg |
25578954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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