View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13607_low_1 (Length: 540)
Name: NF13607_low_1
Description: NF13607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13607_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 298 - 524
Target Start/End: Original strand, 915934 - 916160
Alignment:
| Q |
298 |
ggtaattaaacatttatttcaaccataccaaaaacggagtgatggtgtgtcctattccaacctttccaatctcctctgttttttattcaccacctacttg |
397 |
Q |
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| T |
915934 |
ggtaattaaacatttatttcaaccataccaaaaacggagtgatggtgtgtcctattccaacctttccaatctcctctgttttttattcaccacctacttg |
916033 |
T |
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| Q |
398 |
ggaagttgaagttgacctcgtactgtgtttgtttgatgaagacaactcagttgaccttctcctgagtatctgtctcataccatcagcaacacaaactgca |
497 |
Q |
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| T |
916034 |
ggaagtggaagttgacctcgtactgtgtttgtttgatgaagacaactcagttgaccttctcctgagtatctgtctcataccatcagcaacacaaactgca |
916133 |
T |
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| Q |
498 |
ggatttgatttaatcttgcgacagaac |
524 |
Q |
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| T |
916134 |
ggatttgatttaatcttacgacagaac |
916160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 915642 - 915809
Alignment:
| Q |
8 |
atccatgtgaatcatttgtagagggtactgttgt-aagataaca----------agtagaagataacccaaaattagaagtgtttgtgtgttgaatgact |
96 |
Q |
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| T |
915642 |
atccatgtgaatcatttggagagggtactgttgttaagataacatggaaaacaaagtagaagataacccaaaatcagaagtgtttgtgtgttgaatgact |
915741 |
T |
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| Q |
97 |
aagttttgagagagaatggttattgatcattttcatgcagaataaaattgggattcacttctgttgcc |
164 |
Q |
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| T |
915742 |
aagttttgagagagaatggttattgatcattttcatgcagaatataattgggattcacttctgttgcc |
915809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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