View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13607_low_2 (Length: 401)
Name: NF13607_low_2
Description: NF13607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13607_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 51541330 - 51541516
Alignment:
| Q |
1 |
aattgaagaaaagatttcagcggtacttgtaatgtgaagacatccgtgagtttttaacgtcattggtgtcttcataatgtgaaagacatgcactgctctc |
100 |
Q |
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| T |
51541330 |
aattgaagaaaagatttcagcggtacttgtaatgtgaagacatccgtgagtttttaacgtcattggtgtcttcataatgtgaaagacatgcactactctc |
51541429 |
T |
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| Q |
101 |
tcaaacaagggaagatgaaagtgaaataaataatatgacaagaaagggaaggaaaaagatgtctcgaagatgagagatgatgttttg |
187 |
Q |
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| T |
51541430 |
tcaaacaagggaagatgaaagtgaaataaagaatatgacaagaaagggaaggaaaaagatgtctcgaagatgagagatgatgttttg |
51541516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 51542379 - 51542462
Alignment:
| Q |
301 |
attaaagctatacaggaaaatattggtgttgttatcagagctgnnnnnnnncctggagctatgcttgccaccactgttccttct |
384 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
51542379 |
attaaagcaatacaggaaaatattggtgttgttatcagagttgttttttttcctggagctatgcttgccaccactgttccttct |
51542462 |
T |
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