View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13607_low_4 (Length: 319)
Name: NF13607_low_4
Description: NF13607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13607_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 30966450 - 30966348
Alignment:
| Q |
17 |
tatacacataaatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatatgttttta |
116 |
Q |
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| T |
30966450 |
tatacacattaatacagaaagatgttctaatagtaattcaatgtatcaaaattgcaaacacatccaactttagtcggttttgttcttgaatatgttttta |
30966351 |
T |
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| Q |
117 |
gct |
119 |
Q |
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||| |
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| T |
30966350 |
gct |
30966348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 30957318 - 30957225
Alignment:
| Q |
15 |
aatatacacataaatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatat |
109 |
Q |
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| T |
30957318 |
aatatacacattaatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat |
30957225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 30936148 - 30936046
Alignment:
| Q |
27 |
aatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatatgtttttagcttgtcaaa |
126 |
Q |
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| T |
30936148 |
aatacacaaaaatattctaatcgtacttgaatgtatcaacattgcaaacacatccaaatttagtcagtttggttcttaaatatgtatttagctactcaaa |
30936049 |
T |
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| Q |
127 |
tta |
129 |
Q |
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||| |
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| T |
30936048 |
tta |
30936046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 305
Target Start/End: Complemental strand, 30935549 - 30935422
Alignment:
| Q |
170 |
caagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnncctcaactctgcatcacagaggatgtgcaatgaccctgtaaggttgaggact |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| | | | | |
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| T |
30935549 |
caagtaaacatacatagaaatattgaaattctaatcagcctttttttccttcaactctgcatcacagaggacttgcaatgaccctat--------gaagt |
30935458 |
T |
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| Q |
270 |
tgaggcaatggggtgggatctctgtatgtgttgctg |
305 |
Q |
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| T |
30935457 |
tgcggcaatggggtgggatctctgtatgtgctgctg |
30935422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 30965662 - 30965621
Alignment:
| Q |
168 |
cacaagtaaacatacatagaaatattgaaattctaatcagcc |
209 |
Q |
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| T |
30965662 |
cacaagtaaacatacatagaaaaattggaattctaatcagcc |
30965621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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