View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13608_high_1 (Length: 880)
Name: NF13608_high_1
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 748; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 21 - 864
Target Start/End: Complemental strand, 47920275 - 47919453
Alignment:
| Q |
21 |
attacaattggcagtatcataagggatgaccatttgacaatatatagatcagcaaactcgtcgtcaacatcatcaccgcaagattttgaagtcaaggtga |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47920275 |
attacaattggcagtatcataagggatgaccatttgacaatatatagatcagcaaactcgtcgtcaacatcatcaccgccagattttgaagtcaaggtga |
47920176 |
T |
|
| Q |
121 |
atgatatttcaacgcctgcaatgactttgagtaaaccttgaagcacggcagctagatgttttctccaccattcttccagctcaattcctgaccacttaat |
220 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920175 |
atgagatttcaacgcctgcaatgactttgagtaaaccttgaagcacggcagctagatgttttctccaccattcttccagctcaattcctgaccacttaat |
47920076 |
T |
|
| Q |
221 |
ttcaagcatagcaagaatgcacaaagtcacattaatagccaagaggtaaaccaaaaagttgacattgagtgtttggacaatgaactgtccagagaggagg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
47920075 |
ttcaagcatagcaagaatgcacaaagtcacattaatagccaagaggtaaaccaata---------------------caatgaactgtccagagaggagg |
47919997 |
T |
|
| Q |
321 |
gaaagtgaatggatagattccaacattaaggtatgctatcctctgaagaaatttcattcttcgggaggccataattgcattgtttttcgagaagaatatt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47919996 |
gaaagtgaatggatagattccaacattaaggtatgctatcctctgaagaaatttcattcttcgggaggccataattgcattgtttttcgagaagaatatt |
47919897 |
T |
|
| Q |
421 |
tcaactgagccagtagcccatctaagaacctgatgggagcagttccgcggaaggcatctagtttggttacacagtaaactgacttccatcctctattatg |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47919896 |
tcaactgagccagtagcccatctaagaacctgatgggagcagttccgcggaaggcgtctagtttagttacacagtaaactgacttccatcctctattatg |
47919797 |
T |
|
| Q |
521 |
catcctataacaagtgaccacatcctcagtaactgatccatatatccatccaacacgctgtccccactcagtcttgtcctcataccaacatgaaatcaca |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47919796 |
catcctataacaagtgaccacatcctcagtaactgatccatatatccatccaacacgctgtccccactcagtcttgtcctcataccaacatgaaatcaca |
47919697 |
T |
|
| Q |
621 |
ctgatggcttctgccacagttgatgcatcaagcagctcacgaggtatggtgagagcaccaggagggtgtccatttttcaaagaaggatgatcagcaagcg |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47919696 |
ctgatggcttctgccacagttgatgcatcaagcagctcacgaggtatggtgagagcaccaggagggtgtccatttttcaaagaaggatgatcagcaagcg |
47919597 |
T |
|
| Q |
721 |
gcctaccttggaactgtgccactggaattgagtcaataagaatatttgagttaccaaatttcttggagaattgtgaaagattcacctcttcatcatcaca |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
47919596 |
gcctaccttggaactgtgccactggaattgagtcaataagaatatttgagttaccaaatttcttggagaattgtgaaagattcacctcttcatcatcata |
47919497 |
T |
|
| Q |
821 |
gtcacccatccttagtgcctggttctcttctgaggtgttgacat |
864 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47919496 |
gtcacccatccttagtgcctggttctcttctgagctgttgacat |
47919453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 482 - 604
Target Start/End: Complemental strand, 44634988 - 44634866
Alignment:
| Q |
482 |
tttggttacacagtaaactgacttccatcctctattatgcatcctataacaagtgaccacatcctcagtaactgatccatatatccatccaacacgctgt |
581 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||| ||||| || |||| || || ||||| || |||||||| ||||||||||||||||| | | |
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|
| T |
44634988 |
tttggtcacacagtaaactgacctccaccctctattgtgcattctgtaaccggtaacaacatcttctgtaactgaaccatatatccatccaactcttttc |
44634889 |
T |
|
| Q |
582 |
ccccactcagtcttgtcctcata |
604 |
Q |
| |
|
||||||||||| || |||||||| |
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|
| T |
44634888 |
ccccactcagttttatcctcata |
44634866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 323 - 860
Target Start/End: Original strand, 29917208 - 29917770
Alignment:
| Q |
323 |
aagtgaatggatagattccaacattaaggtatgctatcctctgaagaaatttcattcttcgggaggccataattgcattgtttttcgagaagaatatttc |
422 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |
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| T |
29917208 |
aagtgaatggataaattccaacattaaggtatgctatcctctgaagaaatttcattcttcgggtggccataattgcattgtttttagagaagaatatctc |
29917307 |
T |
|
| Q |
423 |
aactgagccagtagcccatctaagaacctga----------------------tgggagcagttccgcggaaggcatctagtttggttacacagtaaact |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||| ||||||||||||||| |
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|
| T |
29917308 |
aactgagccagtagcccatctaagaacctgatgcaacctatcagtgagattgatgggagcagttccacggaaggcgtcacgtttagttacacagtaaact |
29917407 |
T |
|
| Q |
501 |
gacttccatcctctattatgcatcctataacaagtgaccacatcctcagtaactgatccatatatccatccaacacgctgtccccactcagtcttgtcct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29917408 |
gacttccatcctctattatgcatcctataaccagtgaccacatcctcagtaactgatccatagatccatccaacacgctgtccccactcagtcttgtcct |
29917507 |
T |
|
| Q |
601 |
cataccaacatgaaatcacactgatggcttctgccacagttgatgcatcaagcagctcacgaggtatggtgagagcaccaggagggtgtccatttttcaa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
29917508 |
cataccaacatgaaatcacactgatggcttctgccacagtagatgcatcaagcagctcacgaggtatggtgagagcaccaggagggcgtccatttttcac |
29917607 |
T |
|
| Q |
701 |
agaaggatgatcagcaagcggcctaccttggaactgtgccactggaattgagtcaataagaatatttgagttaccaaatttcttggagaattgtgaaaga |
800 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
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| T |
29917608 |
agcaggatgatcagcaagtggcctaccttggaactgtgccactggaattgagtcaataaggatatttgagttcccaaatttcttggagaattgtgataga |
29917707 |
T |
|
| Q |
801 |
ttcacctcttcatcatcaca---gtcacccatccttagtgcctggttctcttctgaggtgttg |
860 |
Q |
| |
|
|||| ||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29917708 |
ttcatctcttcatcgtcagagtcgtcacccatccttagtgccctgttctcttctgaggtgttg |
29917770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 29916828 - 29916993
Alignment:
| Q |
14 |
catcataattacaattggcagtatcataagggatgaccatttgacaatatatagatcagcaaactcgtcgtcaacatcatcaccgcaagattttgaagtc |
113 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
29916828 |
catcatgattacaattggtggtatcataagggatgaccatttgacaatatacagatcagcatactcgtcgtcaacatcatcaccgccagattttgaagtc |
29916927 |
T |
|
| Q |
114 |
aaggtgaatgatatttcaacgcctgcaatgactttgagtaaaccttgaagcacggcagctagatgt |
179 |
Q |
| |
|
|| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29916928 |
aatgtgaatgagatttcaatgcctgcaacaactttgagtaaaccttgaagcacggcagctagatgt |
29916993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 29917027 - 29917174
Alignment:
| Q |
180 |
tttctccaccattcttccagctcaattcctgaccacttaatttcaagcatagcaagaatgcacaaagtcacattaatagccaagaggtaaaccaaaaagt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
29917027 |
tttctccaccattcttccagctcaattcctgaccacttaatttcaagcacagcaagaatgcacaaagtcacagtaatagccaagaggtaagccaaaaaag |
29917126 |
T |
|
| Q |
280 |
tgacattgagtgtttggacaatgaactgtccagagaggagggaaagtg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
29917127 |
tgacattgagtgtttggacaatgaactgtccagagaagagggagagtg |
29917174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 451 - 742
Target Start/End: Original strand, 12192704 - 12192995
Alignment:
| Q |
451 |
tgatgggagcagttccgcggaaggcatctagtttggttacacagtaaactgacttccatcctctattatgcatcctataacaagtgaccacatcctcagt |
550 |
Q |
| |
|
|||| |||||||| || ||||||||||| ||||| ||||| || || ||| ||||||||||||| ||||| ||||||| || || |||||||| || |
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|
| T |
12192704 |
tgattggagcagtaccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggt |
12192803 |
T |
|
| Q |
551 |
aactgatccatatatccatccaacacgctgtccccactcagtcttgtcctcataccaacatgaaatcacactgatggcttctgccacagttgatgcatca |
650 |
Q |
| |
|
|| || || || ||||||||||| | | |||||| || ||||| || |||||||| ||||| || |||||||| || || || | ||| | |||||| |
|
|
| T |
12192804 |
taccgacccgtaaatccatccaactctatctccccattcggtcttatcttcataccagcatgagatgacactgattgcctcagcgatagtagcagcatca |
12192903 |
T |
|
| Q |
651 |
agcagctcacgaggtatggtgagagcaccaggagggtgtccatttttcaaagaaggatgatcagcaagcggcctaccttggaactgtgccac |
742 |
Q |
| |
|
|| || || ||||| | || ||||||||||| | |||||||||| | ||||||||||||||||| || || |||||||||| |||||| |
|
|
| T |
12192904 |
agaagatctcgaggaagtgttagagcaccaggttgacgtccatttttgatggaaggatgatcagcaagtggtctcccttggaactctgccac |
12192995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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