View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13608_low_1 (Length: 1274)

Name: NF13608_low_1
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13608_low_1
NF13608_low_1
[»] chr8 (3 HSPs)
chr8 (274-623)||(12934377-12934726)
chr8 (1016-1189)||(12933811-12933984)
chr8 (1129-1166)||(36999937-36999974)
[»] chr7 (3 HSPs)
chr7 (393-623)||(15300163-15300393)
chr7 (103-193)||(4836354-4836444)
chr7 (1159-1196)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (393-623)||(28607996-28608227)
chr4 (393-623)||(14177647-14177877)
chr4 (1016-1189)||(28608621-28608794)
chr4 (1039-1189)||(14177081-14177231)
chr4 (1128-1181)||(20706182-20706234)
[»] chr5 (3 HSPs)
chr5 (100-193)||(33811019-33811112)
chr5 (100-193)||(33815937-33816030)
chr5 (1159-1196)||(19944036-19944073)
[»] chr6 (2 HSPs)
chr6 (1159-1196)||(796698-796735)
chr6 (1159-1196)||(8273092-8273129)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 9e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 274 - 623
Target Start/End: Complemental strand, 12934726 - 12934377
Alignment:
Q  274 gcaatgtactctgcttcagttgttgaaagtgcaacgcacttttgcaacttagactgccatgatatagctccccctgaaaatgtaaacaaatatccagtac 373  Q
    ||||| || ||||| ||||||||||| |  || || || |||||||| ||||| ||||| |||| ||||||||||| ||| ||||||| |  ||| | |     
T  12934726 gcaatatattctgcctcagttgttgataaggctacacatttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaag 12934627  T
Q  374 tggattttctgttgtcaatgtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacc 473  Q
    | || |||||    || | ||||||||||||||| |||||||| ||||| ||||| |  | ||| |||||||||||||| || || |     | | | ||    
T  12934626 tagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcc 12934527  T
Q  474 tctcaggtacctgagtatccacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggt 573  Q
    | |||| ||||| |  |||||||| || |||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| ||     
T  12934526 tttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggc 12934427  T
Q  574 ctagtacataccattgcatacatcaagcttccgactgctgaagaataagg 623  Q
    || || || ||||||||||||||||| || || |||||||| || |||||    
T  12934426 ctggtgcaaaccattgcatacatcaaactcccaactgctgaggagtaagg 12934377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1016 - 1189
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  1016 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 1114  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  1115 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1189  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1129 - 1166
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  1129 ggttgctccatataaatctcctcttccaaatctccatg 1166  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 393 - 623
Target Start/End: Complemental strand, 15300393 - 15300163
Alignment:
Q  393 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 492  Q
    ||||||||||||||| |||| ||| ||||| ||||| || | ||| |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  15300393 gtcacctgccatatccgcatatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 15300294  T
Q  493 cacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgcat 592  Q
    ||||| ||  ||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || ||||||||||    
T  15300293 cacttcacaacttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcat 15300194  T
Q  593 acatcaagcttccgactgctgaagaataagg 623  Q
    ||||||| || || |||||||| || |||||    
T  15300193 acatcaaactcccaactgctgaggagtaagg 15300163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 4836354 - 4836444
Alignment:
Q  103 atccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 193  Q
    ||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  4836354 atccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 4836444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1159 - 1196
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  1159 tctccatgaagaaatgcagttttcacatccaactgctc 1196  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 8e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 393 - 623
Target Start/End: Original strand, 28607996 - 28608227
Alignment:
Q  393 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 492  Q
    |||||||||||||||||||||||| ||| | ||||| || | ||  |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  28607996 gtcacctgccatatcagcatctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 28608095  T
Q  493 cacttgactgcttcccaatgttccttt-ccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgca 591  Q
    ||||| || |||||||||||||| ||| || |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || |||||||||    
T  28608096 cacttcacagcttcccaatgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgca 28608195  T
Q  592 tacatcaagcttccgactgctgaagaataagg 623  Q
    |||||||| || || |||||||| || |||||    
T  28608196 tacatcaaactcccaactgctgaggagtaagg 28608227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 393 - 623
Target Start/End: Complemental strand, 14177877 - 14177647
Alignment:
Q  393 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 492  Q
    ||||||||||||||| |||||||| ||||| ||||| || | ||  |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  14177877 gtcacctgccatatccgcatctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 14177778  T
Q  493 cacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgcat 592  Q
    ||||| || |||||||| ||||| ||||| |||||   |||||||||||| ||||| |||||| | ||||||||||| || || || || ||||||||||    
T  14177777 cacttcacagcttcccagtgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcat 14177678  T
Q  593 acatcaagcttccgactgctgaagaataagg 623  Q
    ||||||| || || |||||||| || |||||    
T  14177677 acatcaaactcccaactgctgaggagtaagg 14177647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1016 - 1189
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  1016 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 1114  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  1115 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1189  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1039 - 1189
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  1039 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 1137  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  1138 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1189  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1128 - 1181
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  1128 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 1181  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 33811112 - 33811019
Alignment:
Q  100 cgaatccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 193  Q
    |||||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  33811112 cgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 33811019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 33816030 - 33815937
Alignment:
Q  100 cgaatccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 193  Q
    |||||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  33816030 cgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 33815937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1159 - 1196
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  1159 tctccatgaagaaatgcagttttcacatccaactgctc 1196  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1159 - 1196
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  1159 tctccatgaagaaatgcagttttcacatccaactgctc 1196  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1159 - 1196
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  1159 tctccatgaagaaatgcagttttcacatccaactgctc 1196  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University