View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13608_low_10 (Length: 298)
Name: NF13608_low_10
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 26076241 - 26076517
Alignment:
| Q |
1 |
aattcaaacagatagtgggatcattgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaag |
100 |
Q |
| |
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||||||||||||||||||||||| | || ||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
26076241 |
aattcaaacagatagtgggatcactaagatacttatgcaacaacagaccagatatatgctttgcagtaagtataatcagtagattcatgaatgatccaag |
26076340 |
T |
|
| Q |
101 |
gaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggct |
199 |
Q |
| |
|
||| || |||||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||||| | ||||||||| | || || | |||| ||| |
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| T |
26076341 |
gaagtctcatctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagct |
26076440 |
T |
|
| Q |
200 |
aagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
276 |
Q |
| |
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| ||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
26076441 |
gaattagagggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaa |
26076517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 4958698 - 4958422
Alignment:
| Q |
1 |
aattcaaacagatagtgggatcattgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4958698 |
aattcaaacagatagtgggatcattgagatacttatgcaacaacagaccatatatatgctttgcagtaagtatcatcagtagattcatgaatgatccaag |
4958599 |
T |
|
| Q |
101 |
gaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggct |
199 |
Q |
| |
|
||| | |||||| ||||||| ||||| ||| ||||| |||||||||| || |||||||||||||| | || ||| || | ||||| || |||| ||| |
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|
| T |
4958598 |
gaagtttcatctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagct |
4958499 |
T |
|
| Q |
200 |
aagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
276 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | | ||||||||||||| |
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| T |
4958498 |
gaactagagggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa |
4958422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 32368732 - 32368534
Alignment:
| Q |
1 |
aattcaaacagatagtgggatcattgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||| |
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|
| T |
32368732 |
aattcaaacagatagtgggatcattgatgtacttatgcaacaacaaaccagatatatcctttgcagtaagtatcatcggtaggttcatgaatgatccaag |
32368633 |
T |
|
| Q |
101 |
gaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc |
198 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
32368632 |
gaaatctcatctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc |
32368534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 32368525 - 32368391
Alignment:
| Q |
153 |
tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag |
252 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
32368525 |
tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag |
32368426 |
T |
|
| Q |
253 |
aagcacttatggctacctattcaaattaaatgatg |
287 |
Q |
| |
|
||| |||| ||||| |||||||||||| ||||||| |
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| T |
32368425 |
aagtacttctggctgcctattcaaattcaatgatg |
32368391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 12370656 - 12370803
Alignment:
| Q |
1 |
aattcaaacagatagtgggatcattgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaag |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
12370656 |
aattcaaacatatagtgggatcactgagatacttatgcaacagcagaccagatatatgctttgcagtaagtatcatcagtagatgcatgaatgatccaag |
12370755 |
T |
|
| Q |
101 |
gaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg |
148 |
Q |
| |
|
||| || |||||| ||||| | ||||| ||| ||||| |||||||||| |
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|
| T |
12370756 |
gaagtctcatctcactgcatcaaaaaggatattgagatatgtgaaagg |
12370803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 12370874 - 12370945
Alignment:
| Q |
203 |
ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||| | | ||||||||||||| |
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|
| T |
12370874 |
ctagagggatactctgattcagactggtgtggagatagaatgg--aggaaaagcacctctagctacctattcaa |
12370945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 38100050 - 38100001
Alignment:
| Q |
3 |
ttcaaacagatagtgggatcattgaggtacttatgcaatagcagaccaga |
52 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||||||||||||| ||||| |
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|
| T |
38100050 |
ttcaaacaaatagttgggtcattgagatacttatgcaatagcaggccaga |
38100001 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 5243074 - 5243310
Alignment:
| Q |
25 |
tgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaa |
124 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| || |||||| ||||||| || |
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|
| T |
5243074 |
tgagatacttatgtaatagtagaccagatatatgctttgcagtaagtatcattagaagattcatgaatgatccaaggaagtctcatctcactgcagccaa |
5243173 |
T |
|
| Q |
125 |
aagaatactgagaaatgtgaaaggacct-tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattca |
223 |
Q |
| |
|
|| |||| ||||| ||||||||||| || | |||||||| || || || || || || ||| || || ||||||||||||| |||||||| ||||| |
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|
| T |
5243174 |
aataataatgagatatgtgaaaggaactctaaagtttggtttgttgcttacaactgatagcaatgaaggaaaggctaagctagaaggatactcagattct |
5243273 |
T |
|
| Q |
224 |
gactgatgtggagatagaatggataggagaagcactt |
260 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
5243274 |
gactggtgtggatagagaatggatagaagaagcactt |
5243310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1182795 - 1182943
Alignment:
| Q |
1 |
aattcaaacagatagtgggatcattgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaag |
100 |
Q |
| |
|
||||||||| |||||| ||||| |||| | | ||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||| || |
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|
| T |
1182795 |
aattcaaaccgatagttggatctctgagatgcctatgcaataacagacctgatatatgctttgcggtaagtatcatcagtagatacatgaatgatcctag |
1182894 |
T |
|
| Q |
101 |
gaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagga |
149 |
Q |
| |
|
|||||| |||||| |||||||||||||| | || ||| ||||||||||| |
|
|
| T |
1182895 |
gaaatctcatctcactgcagctaaaagagtgctaagatatgtgaaagga |
1182943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 9636619 - 9636687
Alignment:
| Q |
24 |
ttgaggtacttatgcaatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaat |
92 |
Q |
| |
|
||||| ||||||||||||| |||||| || |||||||||| | |||| ||| |||||||| ||||||| |
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|
| T |
9636619 |
ttgagatacttatgcaataccagacctgacatatgctttgaaataagcttcaccagtagatacatgaat |
9636687 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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