View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13608_low_2 (Length: 887)
Name: NF13608_low_2
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 573 - 873
Target Start/End: Original strand, 51022632 - 51022933
Alignment:
| Q |
573 |
aaaaatgggat-ttttatgtgaatttgtttattgtgcagctactaacgatggcagcagagaccttcctatttacctctgagtccgtgaatgagggacacc |
671 |
Q |
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| T |
51022632 |
aaaaatgggatcttttatgtgaatttgtttattgtgcagcttttaacgatggcagcagagaccttcctatttacctctgagtccgtgaatgagggacacc |
51022731 |
T |
|
| Q |
672 |
ctgacaagctttgtgatcaaatctctgatgctgtgctagatgcttgccttgaacaggacgtagacagcaaggttgcttgtgaaacttgcaccaagactaa |
771 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51022732 |
ctgacaagctctgtgatcaaatctctgatgctgtgctagatgcttgccttgaacaggacgtagacagcaaggttgcttgtgaaacttgcaccaagactaa |
51022831 |
T |
|
| Q |
772 |
cttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgat |
871 |
Q |
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| T |
51022832 |
cttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgat |
51022931 |
T |
|
| Q |
872 |
gt |
873 |
Q |
| |
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|| |
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| T |
51022932 |
gt |
51022933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 25 - 565
Target Start/End: Original strand, 51022051 - 51022587
Alignment:
| Q |
25 |
tctttcactgccaacttcttctttactgtt-gttgaatttttcctataaattcgagactcgtttctcacgtttacactcgcacaccttcacaccacacct |
123 |
Q |
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| T |
51022051 |
tctttcactgccaacttcttctttactgtttgttgaatttttcctataaattggagactcatttctcacgtttacactcgcacacct------------- |
51022137 |
T |
|
| Q |
124 |
cctccaatccaagaaatccttcttcaacctctcaacaaggtacctcattttttcttcattcttgcttctgcctttatatttttggttatcgctattcaag |
223 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51022138 |
---ccaatccaagaaacccttcttcaacctctcaacaaggt--------------------ttgcttctgcctttatatttttggttatcgctattcaaa |
51022214 |
T |
|
| Q |
224 |
catttctgtcannnnnnnnnnnnnnnncttctgttaacctaattcgaaatgcaccgtatctcattagtctatgtgatcacgtgtaattagatttagactt |
323 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51022215 |
catttctgtcattttttattttgttttgttctgttaacctaattcgaaatgcaccgtatctcattagtctatgtgatcacgtgtaattagatttagactt |
51022314 |
T |
|
| Q |
324 |
tcagatctggtattattttacatgcaccgtatctctatttttgttggtgcatgtttggctttgtggttagtttcgcagtagatttgaaatgttcatgttt |
423 |
Q |
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| T |
51022315 |
tcagatctggtatta-tttacatgcaccgtatctctatttttgttggtacatgtttggctttgtggtgagtttcgcattagctttgaaattttcatgttt |
51022413 |
T |
|
| Q |
424 |
aaatatcacagtgaat-------------------ccgccgttattttggcaaatctattttgattc-------------ctcttattttattccgctaa |
491 |
Q |
| |
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| T |
51022414 |
agatatcacagtgaatttgccaaaatcacctcaagccgccgttatttttgcaaatctattttgattccaaacatacacttctcttattttattccgctaa |
51022513 |
T |
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| Q |
492 |
ctgaatattattgaaagtgcttaaattttgattttaattttggtctgtagtgcaatggaataatgatttgtgca |
565 |
Q |
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| T |
51022514 |
ctgaatattattgaaagtgcttaaattttgattttaattttggtctgtagtgcaatggaataatgatttgtgca |
51022587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 619 - 873
Target Start/End: Complemental strand, 20526247 - 20525993
Alignment:
| Q |
619 |
gatggcagcagagaccttcctatttacctctgagtccgtgaatgagggacaccctgacaagctttgtgatcaaatctctgatgctgtgctagatgcttgc |
718 |
Q |
| |
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||||||| |||| || ||||||| || ||||| || ||||| ||||||||||| ||||||||||| || || ||||||||||| || |||||||||||| |
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| T |
20526247 |
gatggcaacagaaactttcctatacacatctgaatctgtgaacgagggacaccccgacaagctttgcgaccagatctctgatgccgttctagatgcttgc |
20526148 |
T |
|
| Q |
719 |
cttgaacaggacgtagacagcaaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgact |
818 |
Q |
| |
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|| || || || ||||||||| ||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || || || ||||||| |
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| T |
20526147 |
ctcgagcaagatccagacagcaaagttgcatgtgaaacttgcacaaagaccaacatggttatggtctttggtgagatcacaacaaaagcaaatgttgact |
20526048 |
T |
|
| Q |
819 |
atgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgt |
873 |
Q |
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| || || ||||| ||| | || ||||| || || || |||||||| |||||||| |
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| T |
20526047 |
acgaaaagattgtccgtaaaacatgcaggaacataggttttgtttcagatgatgt |
20525993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 632 - 840
Target Start/End: Original strand, 45207688 - 45207896
Alignment:
| Q |
632 |
accttcctatttacctctgagtccgtgaatgagggacaccctgacaagctttgtgatcaaatctctgatgctgtgctagatgcttgccttgaacaggacg |
731 |
Q |
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||||| |||||||| ||||| || ||||| ||||| ||||| |||||||| || || || ||||||||||| ||||| ||||| || ||||||||||| |
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| T |
45207688 |
acctttctatttacatctgaatcagtgaacgagggtcaccccgacaagctgtgcgaccagatctctgatgcagtgctcgatgcctgtcttgaacaggatc |
45207787 |
T |
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| Q |
732 |
tagacagcaaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgt |
831 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||| || || ||||||||||| || || ||||||||||| || || |
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| T |
45207788 |
ctgacagcaaggttgcctgtgagacttgcaccaagactaacatggtcatggtctttggagaaataacaaccaaggccaatgtagactatgagaagatcgt |
45207887 |
T |
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| Q |
832 |
gcgtgacac |
840 |
Q |
| |
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|||||||| |
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| T |
45207888 |
tcgtgacac |
45207896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 740 - 847
Target Start/End: Original strand, 41212896 - 41213003
Alignment:
| Q |
740 |
aaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtgaca |
839 |
Q |
| |
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|||||||| ||||| || || || ||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||| || || |||| |
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| T |
41212896 |
aaggttgcatgtgagacatgtacaaagactaacatggttatggtctttggtgagataacaaccaaggctaccgtgaactatgagaaaatagttcgagaca |
41212995 |
T |
|
| Q |
840 |
cctgcaga |
847 |
Q |
| |
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| |||||| |
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| T |
41212996 |
cttgcaga |
41213003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 737 - 873
Target Start/End: Complemental strand, 27719022 - 27718886
Alignment:
| Q |
737 |
agcaaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtg |
836 |
Q |
| |
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||||||||||| || || || || || || |||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||| |
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| T |
27719022 |
agcaaggttgcctgcgagacctgtacaaaaactaacatggttatggtctttggtgaaatcacaaccaaggcaaaggtggactatgagaaaatagttcgtg |
27718923 |
T |
|
| Q |
837 |
acacctgcagaaagattgggtttgtttctgatgatgt |
873 |
Q |
| |
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|||| ||||| | ||||||||||| |||| |||||| |
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| T |
27718922 |
acacttgcaggagtattgggtttgtgtctgctgatgt |
27718886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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