View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13608_low_5 (Length: 483)
Name: NF13608_low_5
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 15801939 - 15802385
Alignment:
| Q |
19 |
tgtgtaacccaggacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcgg |
118 |
Q |
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| T |
15801939 |
tgtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcgg |
15802038 |
T |
|
| Q |
119 |
cagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgccacctatgatattatggttagatattg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| |
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| T |
15802039 |
cagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatgatgttgtggttagatattg |
15802138 |
T |
|
| Q |
219 |
tgcctaagtcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatact |
318 |
Q |
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| T |
15802139 |
tgcctaagtcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatact |
15802238 |
T |
|
| Q |
319 |
gtacaagtaaaatggtgattgtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgt |
418 |
Q |
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| T |
15802239 |
gtacaagtaaaatggtgattgtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttgtagtacaagtcatgttgtgt |
15802338 |
T |
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| Q |
419 |
tttgacgttttcatggttgaannnnnnncagtaaccattccaagaat |
465 |
Q |
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| T |
15802339 |
tttgacattttcatggttgaatttttttcattaaccattccaagaat |
15802385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 15794141 - 15794559
Alignment:
| Q |
20 |
gtgtaacccaggacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggc |
119 |
Q |
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|||||||||| || ||||| |||||||||||||| ||| || |||||||| |||||| || || || ||||||||| ||||||||||||| ||| | | |
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| T |
15794141 |
gtgtaacccatgatgcataaatcataccatatcatagctgagacactgttgggacaatattttgcaatatctctaacaacagtgttgatacaaaattgac |
15794240 |
T |
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| Q |
120 |
agaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgccacctatgatattatggttagatattgt |
219 |
Q |
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| T |
15794241 |
agaaacttcctgtgatgtcaccccgacaatcatagaacccataaaccgtatcatgatcattgttgttgttgctaactatggtgttgtggttagatactgt |
15794340 |
T |
|
| Q |
220 |
gcctaagtcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactg |
319 |
Q |
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| | ||||||| || || ||||||| |||| | | ||||||||||||||||| |||| ||| ||| |||||| |||||||||| ||||| ||| |
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| T |
15794341 |
ttgtttggcagaatccgatgttgtccatgacagaaagttgttaacgttggattggtacgaagcgttgagtattttttgagttgaattctcgcaaacacta |
15794440 |
T |
|
| Q |
320 |
tacaagtaaaatggtgattgtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgtt |
419 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
15794441 |
tacatataaaatggtgattgtgcagttgttaggatcatgaagaggaggagattaaggagaatgaagcttagaaaccttgtagtataagtcatgttgtgtg |
15794540 |
T |
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| Q |
420 |
ttgacgttttcatggttga |
438 |
Q |
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| T |
15794541 |
gtgacgttttcattgttga |
15794559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 419
Target Start/End: Original strand, 15807562 - 15807958
Alignment:
| Q |
23 |
taacccaggacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcaga |
122 |
Q |
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| T |
15807562 |
taacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaattgacaga |
15807661 |
T |
|
| Q |
123 |
aacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgccacctatgatattatggttagatattgtgcc |
222 |
Q |
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| T |
15807662 |
aacttcttgtgttaggacctagacaatcatagaacccataaaccgtatcattataattgctgttgttgctacctatggtgttgtggttagatacagttcc |
15807761 |
T |
|
| Q |
223 |
taagtcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtac |
322 |
Q |
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| T |
15807762 |
tttggcagaatccgatgttgtccatgacaaaaagttgttaacgttggattgatatgaagtgttgactgttttttcagtagaattctggcaataactgtac |
15807861 |
T |
|
| Q |
323 |
aagtaaaatggtgattgtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgtt |
419 |
Q |
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| T |
15807862 |
atgtaaaatggtgattgcgcattcgttagcgtcatgaagaggaagtgatgaagtagaatgaagcttagaaaccttgtagtacaagtcatgttgtgtt |
15807958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 414
Target Start/End: Original strand, 15815673 - 15815823
Alignment:
| Q |
261 |
taacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaa |
360 |
Q |
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||||||||||| ||||||| ||||| |||||||||||||||||||||||||| | | || |||| |||||||||||||| |||||| | |||| |
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| T |
15815673 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgtaatatggtgattgtgcatttgttaag---gtgaa |
15815769 |
T |
|
| Q |
361 |
gaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgtt |
414 |
Q |
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| T |
15815770 |
gagaaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgtt |
15815823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 15815441 - 15815562
Alignment:
| Q |
41 |
tcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcac |
140 |
Q |
| |
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||||||||||||| |||||| || | || ||||||| ||||||||| |||||||||||| ||||||||| ||| | |||||||||||||| | ||||| |
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| T |
15815441 |
tcataccatatcatagccgagacgccattgggacaacattgagcgatcgctctaacagcagcgttgatacaaaattgacagaaacttcctgttacgtcac |
15815540 |
T |
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| Q |
141 |
ctcgacaaccgtataacccata |
162 |
Q |
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| T |
15815541 |
cacgacaatcgtagaatccata |
15815562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 15700230 - 15700313
Alignment:
| Q |
65 |
ctgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaa |
148 |
Q |
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| T |
15700230 |
ctgttaagacaacgttgagcaatttctttgacagcagtgttgatacaaaattgacagaaacttcctgtgacgtcagcccgacaa |
15700313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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