View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13608_low_6 (Length: 482)

Name: NF13608_low_6
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13608_low_6
NF13608_low_6
[»] chr7 (17 HSPs)
chr7 (1-464)||(24696973-24697436)
chr7 (82-442)||(24537331-24537679)
chr7 (275-457)||(24826664-24826846)
chr7 (101-229)||(24826937-24827065)
chr7 (104-229)||(24727106-24727231)
chr7 (104-229)||(24854911-24855036)
chr7 (104-225)||(24896155-24896276)
chr7 (136-229)||(24899843-24899936)
chr7 (351-442)||(24726819-24726910)
chr7 (122-229)||(24807201-24807308)
chr7 (116-210)||(24863523-24863617)
chr7 (128-229)||(24754919-24755020)
chr7 (146-229)||(24842987-24843070)
chr7 (275-341)||(24726943-24727009)
chr7 (275-353)||(24807041-24807119)
chr7 (150-229)||(24834667-24834746)
chr7 (375-442)||(24854709-24854776)


Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 24697436 - 24696973
Alignment:
Q  1 aactttaatttaagcttggtgtggaggagtttatgtggtttgcttaacagtatctttcttgtgaatgagaggggcaggcacttggatttggattatattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697436 aactttaatttaagcttggtgtggaggagtttatgtggtttgcttaacagtatctttcttgtgaatgagaggggcaggcacttggatttggattatattc 24697337  T
Q  101 accaagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697336 accaagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaa 24697237  T
Q  201 gtggtgcaatctaattgcttgggaacatcttcaaagtaatcttcgaagtacaacaagaaggggctctggtaactgcaaattcacttcggctgctttgatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697236 gtggtgcaatctaattgcttgggaacatcttcaaagtaatcttcgaagtacaacaagaaggggctctggtaactgcaaattcacttcggctgctttgatt 24697137  T
Q  301 ttcaatggcttgatctgttctgaagacgatgttcaacttcttaagaacaagaaaatagttgtggatcatctcaagatgagcaaccgagagcttgtggagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697136 ttcaatggcttgatctgttctgaagacgatgttcaacttcttaagaacaagaaaatagttgtggatcatctcaagatgagcaaccgagagcttgtggagt 24697037  T
Q  401 atttccgcaaagtagcattgggagttgaccataaagtagttgcttacagtatttatactgaaat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697036 atttccgcaaagtagcattgggagttgaccataaagtagttgcttacagtatttatactgaaat 24696973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 82 - 442
Target Start/End: Original strand, 24537331 - 24537679
Alignment:
Q  82 ttggatttggattatattcaccaagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatca 181  Q
    |||||||||||| |||||    |||||||| ||||| || || || ||||| | || ||||||||||||||| |||||||||||||||| ||||||||||    
T  24537331 ttggatttggatcatatttctgaagaggtgaaattggaaggtatggactttaaattcaagtttgaaaagggggaacttgaaattgaacagttgcatatca 24537430  T
Q  182 ctaaaacaacaaaagccaagtggtgcaatctaattgcttgggaacatcttcaaagtaatcttcgaagtacaacaagaaggggctctggtaactgcaaatt 281  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||            | ||||| | ||||||||   |||||||||    
T  24537431 caaaaacaacaaaagctaagtggtgcaatctaattgcttgggaacatcttcaaactaa------------agcaagaggcggctctggcggctgcaaatt 24537518  T
Q  282 cacttcggctgctttgattttcaatggcttgatctgttctgaagacgatgttcaacttcttaagaacaagaaaatagttgtggatcatctcaagatgagc 381  Q
    ||||| |||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||| || | |||||||||    
T  24537519 cactttggctgctttgattttcaacggtctgatctgttcggaagatgatgttcaacttcttaaggacaagaaaattgttgtggattatgtgaagatgagc 24537618  T
Q  382 aaccgagagcttgtggagtatttccgcaaagtagcattgggagttgaccataaagtagttg 442  Q
    |||| ||||||  |||||| |||||||  | ||||||| |||||||||||| |||||||||    
T  24537619 aaccaagagctgatggagtttttccgcgcaatagcatttggagttgaccatgaagtagttg 24537679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 457
Target Start/End: Complemental strand, 24826846 - 24826664
Alignment:
Q  275 gcaaattcacttcggctgctttgattttcaatggcttgatctgttctgaagacgatgttcaacttcttaagaacaagaaaatagttgtggatcatctcaa 374  Q
    ||||||| |||| |||||||||||||||||| |   |||||||||||| ||| ||||| |||||||| ||  ||||||||||  |||||||| |||||||    
T  24826846 gcaaatttacttgggctgctttgattttcaacgatctgatctgttctgcagatgatgtccaacttctcaaagacaagaaaatcattgtggataatctcaa 24826747  T
Q  375 gatgagcaaccgagagcttgtggagtatttccgcaaagtagcattgggagttgaccataaagtagttgcttacagtatttata 457  Q
    ||||||||||| ||||||  |||||| |||||||||| ||||| | ||| |||||||||| ||||||| || ||||| |||||    
T  24826746 gatgagcaaccaagagctgatggagtttttccgcaaaatagcacttggaattgaccataaggtagttgattccagtacttata 24826664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 24827065 - 24826937
Alignment:
Q  101 accaagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaa 200  Q
    |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| ||  ||||||||| ||||| |||||||||| ||||| |||||||||||    
T  24827065 accaagagatggaattgaaaggtttggacttttactttaagtttgaaaaggagactcttgaaattaaacaactgcatatcacaaaaacgacaaaagccaa 24826966  T
Q  201 gtggtgcaatctaattgcttgggaacatc 229  Q
    |||||| ||||| ||||||||||| ||||    
T  24826965 gtggtgtaatcttattgcttgggagcatc 24826937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 24727231 - 24727106
Alignment:
Q  104 aagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtg 203  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||| |||||||||||||||||  | |||||||| || ||||||||| |||||||    
T  24727231 aagaggtggaaatgaaaggtttggacttttactttaagtttaaaaagggcaaacttgaaattgaacagctacatatcacaaacacaacaaaatccaagtg 24727132  T
Q  204 gtgcaatctaattgcttgggaacatc 229  Q
    ||  ||||||||||||||||||||||    
T  24727131 gtataatctaattgcttgggaacatc 24727106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 24855036 - 24854911
Alignment:
Q  104 aagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtg 203  Q
    ||||||| ||| ||||| | ||| | ||| ||||||||||| |||| ||| ||||||||||||||||| |||||||||| ||||||| |||||  |||||    
T  24855036 aagaggtagaagtgaaaggattggatttttactttaagtttcaaaatggggaacttgaaattgaacaactgcatatcacaaaaacaaaaaaagataagtg 24854937  T
Q  204 gtgcaatctaattgcttgggaacatc 229  Q
    ||||||| ||||||||||||||||||    
T  24854936 gtgcaatataattgcttgggaacatc 24854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 24896276 - 24896155
Alignment:
Q  104 aagaggtggaattgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtg 203  Q
    ||||||| ||| ||||| | ||| | ||| ||||||||||| |||| ||| ||||||||||||||||| |||||||||  |||||||||||||| |||||    
T  24896276 aagaggtagaagtgaaaggattggatttttactttaagtttcaaaatggggaacttgaaattgaacaactgcatatcataaaaacaacaaaagctaagtg 24896177  T
Q  204 gtgcaatctaattgcttgggaa 225  Q
    ||||||| ||||||||||||||    
T  24896176 gtgcaatataattgcttgggaa 24896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 24899843 - 24899936
Alignment:
Q  136 tttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaatctaattgcttgggaacatc 229  Q
    ||||||||||| || |||||| ||||||||| |||||||||||| || ||||| || ||||| |||||||||||| ||||||||||||| ||||    
T  24899843 tttaagtttgagaatgggaaatttgaaattgcacaattgcatattacaaaaactacgaaagcaaagtggtgcaatgtaattgcttgggagcatc 24899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 24726910 - 24726819
Alignment:
Q  351 gaaaatagttgtggatcatctcaagatgagcaaccgagagcttgtggagtatttccgcaaagtagcattgggagttgaccataaagtagttg 442  Q
    |||||| |||||||||||||||||||||||||||| |||| |  |||||| |||||||||| ||||| | |||| ||||||||| |||||||    
T  24726910 gaaaattgttgtggatcatctcaagatgagcaaccaagaggtgatggagtttttccgcaaaatagcacttggagctgaccataaggtagttg 24726819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 24807308 - 24807201
Alignment:
Q  122 gtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaatctaattgcttg 221  Q
    ||||||||||| | |||||||||||||| ||||||||| |||||| || | |||||||||| |||||||| || || |||||| ||||| | ||||||||    
T  24807308 gtttgaactttgagtttaagtttgaaaacgggaaacttcaaattgcaccactgcatatcacaaaaacaacgaaggcaaagtggcgcaatatgattgcttg 24807209  T
Q  222 ggaacatc 229  Q
    ||| ||||    
T  24807208 ggagcatc 24807201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 24863617 - 24863523
Alignment:
Q  116 tgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaat 210  Q
    ||||| ||||| ||||||| ||||||||||| || ||||||||  |||||||||| |||||||||||  ||||||||||||| |||||| |||||    
T  24863617 tgaaaggtttggactttcattttaagtttgacaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 24863523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 24755020 - 24754919
Alignment:
Q  128 actttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaatctaattgcttgggaaca 227  Q
    ||||| ||||||| ||||||||||||| ||| ||||||| ||| ||  | || || |||||||||||||| |||||||||||| | ||||||||||| ||    
T  24755020 acttttactttaactttgaaaaggggacactggaaattgcacagttagagataacaaaaacaacaaaagctaagtggtgcaatgtcattgcttgggagca 24754921  T
Q  228 tc 229  Q
    ||    
T  24754920 tc 24754919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 24842987 - 24843070
Alignment:
Q  146 aaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaatctaattgcttgggaacatc 229  Q
    ||||||||||||| ||||||| ||| || ||||||||||||||||| ||||| ||||||  |||| | ||||||| ||| ||||    
T  24842987 aaaaggggaaactggaaattgcacagttacatatcactaaaacaacgaaagcaaagtggctcaatttcattgctttggagcatc 24843070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 24727009 - 24726943
Alignment:
Q  275 gcaaattcacttcggctgctttgattttcaatggcttgatctgttctgaagacgatgttcaacttct 341  Q
    |||||||||||| |||||||| ||||||||||||  |||| ||||||| ||| ||||| ||||||||    
T  24727009 gcaaattcacttgggctgcttcgattttcaatggtctgatatgttctgcagatgatgtccaacttct 24726943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 24807119 - 24807041
Alignment:
Q  275 gcaaattcacttcggctgctttgattttcaatggcttgatctgttctgaagacgatgttcaacttcttaagaacaagaa 353  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||| | || ||| |||||  ||||||| |||||||||||    
T  24807119 gcaaattcgcttcggctgcgttgattttcaatgacttaatctgctgtgcagatgatgtgaaacttctcaagaacaagaa 24807041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 24834746 - 24834667
Alignment:
Q  150 ggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaatctaattgcttgggaacatc 229  Q
    ||||||||| ||||||| ||| |||||||||||  ||||||| ||||| |||||| ||||| | |||| |||||| ||||    
T  24834746 ggggaaactcgaaattgcacagttgcatatcacagaaacaacgaaagcaaagtggcgcaatgtcattgtttgggagcatc 24834667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 442
Target Start/End: Complemental strand, 24854776 - 24854709
Alignment:
Q  375 gatgagcaaccgagagcttgtggagtatttccgcaaagtagcattgggagttgaccataaagtagttg 442  Q
    ||||||||||| |||| |  |||||| |||||||| | ||||||| || |||||||||||||||||||    
T  24854776 gatgagcaaccaagaggtgatggagtttttccgcacaatagcatttggggttgaccataaagtagttg 24854709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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