View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13608_low_7 (Length: 435)
Name: NF13608_low_7
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 25 - 419
Target Start/End: Complemental strand, 35644760 - 35644365
Alignment:
| Q |
25 |
ttaattttttatgattggttcaattttttggaaataacaaggttaacgtatttgaaaatgtatgggtttgaagtaaatattggataagttatattagagc |
124 |
Q |
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| T |
35644760 |
ttaattttttatgattggttcaattttttggaaataacgaggttatcgtatttaaaaatgcatgggtttgaagtaaatattgaataagttatattagagc |
35644661 |
T |
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| Q |
125 |
aacaattagatatgtcaaataaacgagaccttgagttgtagcacaaataggtctccttggtaaacatcatgaacacaaacctcaaattgtaattgaacca |
224 |
Q |
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| T |
35644660 |
aacaattagatatgtcaaataaacgagacattgagttgtagcacaaataggtctacttggtaaacatcatgaacacgaacctcaaattgtaattgaacca |
35644561 |
T |
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| Q |
225 |
gtaacttga-ttatcaaacaagaagatatagaggaatcgagaaatcataactgttcgtcatcattttgtgttaacctattttattttctttgcatacacc |
323 |
Q |
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| T |
35644560 |
gtaacttgatttaccaaacaaggagatataggggattcaaggaatcctaaccgttcgtcatcattttgtgttaacctattttactttctttgcatatacc |
35644461 |
T |
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| Q |
324 |
aaatcctatgcaaactcccgatttattgtttttaattaagcttaatataattggtgagtcgaacaacaatccctgtaaaaacaatatctacttact |
419 |
Q |
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| T |
35644460 |
aaatcctatgcaaactcccgatttattgtttttaattaagcttaatataattgtcgagtcgaacaacaatctctgtaaaaacaatatctacttact |
35644365 |
T |
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