View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13608_low_8 (Length: 430)
Name: NF13608_low_8
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Complemental strand, 23694518 - 23694100
Alignment:
| Q |
3 |
gacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatccactacttggatttcattttttacatctataatagtat |
102 |
Q |
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| T |
23694518 |
gacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatccactacttggatttcattttttacatctatagtagtat |
23694419 |
T |
|
| Q |
103 |
ttgacaaaagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctttatcatgaatggctga |
202 |
Q |
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| T |
23694418 |
ttgacataagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctttatcatgaatggctga |
23694319 |
T |
|
| Q |
203 |
gaagtagaaatcatctgctgtagaggatggtgaagttccctccatgtccccaggatgaaaagaatgaaaagaaactcaacaatatgtgttgaagacaaag |
302 |
Q |
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| T |
23694318 |
gaagtagaaatcatctgctgtagaggatggtgaagttccctccatgtccccaggatgaaaagaatgaaaagaaactcaacaatatgtgttgaagacaagg |
23694219 |
T |
|
| Q |
303 |
gtgattttcacatgtttttgtcgatttggttttggtggttgctgctaccattggaattgga---aatt----------taaatgctagatgatggaaatc |
389 |
Q |
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| T |
23694218 |
gtgattttcacatgtttttgtcgatttggttttggtggt---tgctaccattggaattggaattaatttaaatgctagtaaatgctagatgatggaaatc |
23694122 |
T |
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| Q |
390 |
taggaatttggaaagaccttgc |
411 |
Q |
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| T |
23694121 |
taggaatttggaaagaccttgc |
23694100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 23701296 - 23701488
Alignment:
| Q |
2 |
cgacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatccactacttggatttcattttttacatctataatagta |
101 |
Q |
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|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
23701296 |
cgacaaagaatattcacctacaaaagcctgcttctgcttctgtttgagatcaacttttgtatccacttcttggatttcatattttacatctatagtagta |
23701395 |
T |
|
| Q |
102 |
tttgacaaaagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctttatcatga |
194 |
Q |
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| T |
23701396 |
tttgacataagagcggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataatcgaaaaatttcttcatcatga |
23701488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 23696310 - 23696267
Alignment:
| Q |
368 |
taaatgctagatgatggaaatctaggaatttggaaagaccttgc |
411 |
Q |
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||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
23696310 |
taaatgctaaataatggcaatctaggaatttggaaagaccttgc |
23696267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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