View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13608_low_9 (Length: 410)
Name: NF13608_low_9
Description: NF13608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13608_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 47 - 331
Target Start/End: Complemental strand, 3851942 - 3851658
Alignment:
| Q |
47 |
cttaattagttaaggggttctctctaaatcataaccaatagaaacttctta--acctacgcagtttctaaccagtttccttttccaccatcaacaccact |
144 |
Q |
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| T |
3851942 |
cttaattagttaaggggttctct--aaatcataaccaatagaaacttcttataacctacgcagtttctaaccagtttccttttccaccatcaacaccact |
3851845 |
T |
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| Q |
145 |
ttttctctcttaaatttctttcaataaaccatataataatagattctaggaaattcaccttgactttgcatcatccttttctcttatacctttcatataa |
244 |
Q |
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| T |
3851844 |
ttttctctcttaaatttctttcaataaaccatataataatagattctaggaaattcaccttgactttgcatcatccttttctcttatacctttcatataa |
3851745 |
T |
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| Q |
245 |
atacttagccaaacttgtattttttaaatcataatatcagatattcatcaaacaatcaaaaacactaatattttgaatctcttgttc |
331 |
Q |
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| T |
3851744 |
atacttagccaaagttgtattttttaaatcataatatcacatattcatcaaacaatcaaaaacactaatattttgaatctcttgttc |
3851658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 3851634 - 3851596
Alignment:
| Q |
355 |
gagatgatgaaaagtgagataaacatgcttggtgttaac |
393 |
Q |
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| T |
3851634 |
gagatgatgaaaagtgagataaacatgcttggtgttaac |
3851596 |
T |
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