View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13609_low_1 (Length: 763)
Name: NF13609_low_1
Description: NF13609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13609_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 11 - 745
Target Start/End: Complemental strand, 10368299 - 10367565
Alignment:
| Q |
11 |
tccaagaatataaaactatcttatcattgcttactgatcatgtgcattgatttcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatc |
110 |
Q |
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| T |
10368299 |
tccaacaaaataaaactatcttatcattgcttactgatcatgtgcattgatttcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatc |
10368200 |
T |
|
| Q |
111 |
gaaatccaacggctttcagtccatgtatgatccacaagatgaagctcaaataattttctaaccatagaatgttgtccattccaaaagcaactggaaatca |
210 |
Q |
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| T |
10368199 |
gaaatccaacggctttcagtccatgtatgatccacaagatgaagctcaaataattttctaaccatagaatgttgtccattccaaaagcaactggaaatca |
10368100 |
T |
|
| Q |
211 |
cgaaaagtcgtccatttcaagatacgagatgagggtggtatggattagcatatacatgagatgggaatggttgagatgtttgaattacaatccaaaaacc |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368099 |
cgaaaagtcgtccattacaagatacgagatgagggtggtatggattagcatatacatgagatgggaatggttgagatgtttgaattacaatccaaaaacc |
10368000 |
T |
|
| Q |
311 |
tctttctatgtcatatgctgcaagcttttcattccttgaacaaacaaaaaacttgctcttacaaacagttccagaactaactcccccaaaatctaaaggc |
410 |
Q |
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| T |
10367999 |
tctttctatgtcatatgctgcaagcttttcattccttgaacaaacataaaacttggtcttacaaacagttccagaactaactcccccaaaatctaaagga |
10367900 |
T |
|
| Q |
411 |
agactttgtatatcagtccattcgtttgttgaagaatcataaatttctccacgatacaatgactcgttctcggttctttctatagcaatcaataaaaatg |
510 |
Q |
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| T |
10367899 |
agactttgtatatcagtccattcatttgttgaagaatcataaatttctccacgatacaatgactcgttcacggttcttcctatagcaatcaataaaaatg |
10367800 |
T |
|
| Q |
511 |
ttcttttaaagaccgttgagcttgtcgttgaatgatcactttttctttgtccaatgaacttgtatgtcatagccattttactaatgaaagatgaatactt |
610 |
Q |
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||||||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
10367799 |
atcttttaaagacctttgagcttgtagatgaacgatcactttttctttgtccaatgaacttgcatgtcatagccattttactaatgaaa-atgaatactt |
10367701 |
T |
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| Q |
611 |
gtaaggaataatagaatcctcaatgactcctaataaaggaagagctctagaat-tttcatagatggcatattatgccatgtttttgtgacagcactnnnn |
709 |
Q |
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| T |
10367700 |
gcaaggaataatagaatcctcaatgactactaataaaggaagagctctcgaatatttcatagatggcatattatgccaagtttttgtgacagcattgaaa |
10367601 |
T |
|
| Q |
710 |
nnnncaacctcattgtgttctttaattggacctact |
745 |
Q |
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| T |
10367600 |
aaaacaacctcattgtgttctttaattggacctact |
10367565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 54155219 - 54155266
Alignment:
| Q |
290 |
ttgaattacaatccaaaaacctctttctatgtcatatgctgcaagctt |
337 |
Q |
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| T |
54155219 |
ttgaattgcaatccagaaacctcgttctatgtcatatgctgcaagctt |
54155266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 745
Target Start/End: Complemental strand, 10379279 - 10379248
Alignment:
| Q |
714 |
caacctcattgtgttctttaattggacctact |
745 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10379279 |
caacctcattgtgttctttaattggacctact |
10379248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 598 - 698
Target Start/End: Complemental strand, 43658080 - 43657979
Alignment:
| Q |
598 |
aagatgaatacttgtaaggaataatagaatcctcaatgactcctaataaaggaagagctctagaattttc-atagatggcatattatgccatgtttttgt |
696 |
Q |
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|||||||| ||||||||||||||| | ||||||| |||||||||| | |||||| ||||| || ||| |||||||||||||||||||||| |||||| |
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| T |
43658080 |
aagatgaacacttgtaaggaataacatgatcctcagtgactcctaacacgggaagatatctagcatattccatagatggcatattatgccatgattttgt |
43657981 |
T |
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| Q |
697 |
ga |
698 |
Q |
| |
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|| |
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| T |
43657980 |
ga |
43657979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 43658375 - 43658309
Alignment:
| Q |
275 |
gaatggttgagatgtttgaattacaatccaaaaacctctttctatgtcatatgctgcaagcttttca |
341 |
Q |
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| T |
43658375 |
gaatggtagatatgtttgtattgcaatccaaaaatctttttctatgtcatacgctacaagcttttca |
43658309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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