View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13609_low_2 (Length: 359)
Name: NF13609_low_2
Description: NF13609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13609_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 45138954 - 45138612
Alignment:
| Q |
18 |
tctttattgctcataaggcgtccaggagttacgaattgatttgtttgggagattactcatgaactgtgttcgggacatagctcgtgatgggtatgtgagt |
117 |
Q |
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| T |
45138954 |
tctttattgctcataaggcgtccaggagttacgaattgatttgtttgggagattactcatgaactgtgttcgggacatagctcgtgatgggtatgtgagt |
45138855 |
T |
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| Q |
118 |
agcattgtgaacaacaacacttcaaattgataaacataagnnnnnnnnnnnnnaaaaataaaagatagaacattactcaaattcaaaaacattatgcaaa |
217 |
Q |
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| T |
45138854 |
agcattgtgaacaacaacacttcaaattgataaacataagttttttttttt---aaaataaaagatagaacattactcaaattcaaaaacattatgcaaa |
45138758 |
T |
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| Q |
218 |
ttgacaacacaatttaaaatgagtacatagtttgggtttgttgaaac----tgtcgatgtcaaaaatgttaaaatcttttgattgaagagttattgcttc |
313 |
Q |
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| T |
45138757 |
ttgacaacacaatttaaaatgactacatagtttgggtttgttgaaactgtctgtcgatgtcaaaaatgttaaaatcttttgattgaagagttattgcttc |
45138658 |
T |
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| Q |
314 |
taaaatattcaaaattacaacatagtttatgttaatatagtttgat |
359 |
Q |
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| T |
45138657 |
taaaatattaaaaattacaacatagtttatgttaatatagtttgat |
45138612 |
T |
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Back To:
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 32251228 - 32251163
Alignment:
| Q |
82 |
tgtgttcgggacatagctcgtgatgggtatgtgagtagcattgtgaacaacaacacttcaaattga |
147 |
Q |
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| T |
32251228 |
tgtgttcggaacgtagctctagatgggtctctgaatagcattgtgaacaacaacacttcaagttga |
32251163 |
T |
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