View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13609_low_4 (Length: 232)
Name: NF13609_low_4
Description: NF13609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13609_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 10547030 - 10547226
Alignment:
| Q |
34 |
atcaatatcgatcatttcaccatctcgattcatgcaattccttgtccatgttttttatatagacacaaattgctgtagttaatttgttaggggaggagat |
133 |
Q |
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| T |
10547030 |
atcaatatcgatcatttcaccatctcaattcatgcaattccttgtccatgttttttata--gacgcaaattgttgtagttaatttgtcaggggaggagat |
10547127 |
T |
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| Q |
134 |
atttgttaccactaggaatcgaattatgacctatttggtaatacttcttcgacgtttcaaagagaactccttttactttgtgaaacattacaaagcaat |
232 |
Q |
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| T |
10547128 |
atttgttaccactaggaatcgaattatgacctatttggtaatacttcttcgacgtttcaaagagaactccttttactttgtgaaacattacaaagcaat |
10547226 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 10547245 - 10547301
Alignment:
| Q |
176 |
acttcttcgacgtttcaaagagaactccttttactttgtgaaacattacaaagcaat |
232 |
Q |
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| T |
10547245 |
acttcttcaacgtttcaaagagatatccttttgctttgtgaaacattacaaagcaat |
10547301 |
T |
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