View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1360_high_3 (Length: 317)
Name: NF1360_high_3
Description: NF1360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1360_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 88 - 317
Target Start/End: Complemental strand, 13744612 - 13744383
Alignment:
| Q |
88 |
taagtaaatgtatcggtctatgttacattattcaacaacaaacgtgaagacgtaatgaatgcccaacttcaaaccaaatgggaggtcaaacctgagagat |
187 |
Q |
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| T |
13744612 |
taagaaaatgtattggtctatgttacattattcaacaacaaacgtgatgacataatcaatgcccaacttcaaaccaaatgggagatcaaacctgagagat |
13744513 |
T |
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| Q |
188 |
gtgaagcaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtgataatgcaatggtcgtagagtaacacagctcttccacaaataaatcat |
287 |
Q |
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| T |
13744512 |
ctgaaccaaagtgtgcgtgcatgtatagcacagcatcaaaaacataaatgtggtaatgcaatggtcgtaaagtaacacagctcttccacaaataattcat |
13744413 |
T |
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| Q |
288 |
tagcaaaaataaagacaagctcaacataaa |
317 |
Q |
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| T |
13744412 |
tggcaaaaataaagacgagttcaacataaa |
13744383 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 52268682 - 52268729
Alignment:
| Q |
259 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
306 |
Q |
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| T |
52268682 |
gtaacacagctcttccacaaataaatcattagcaaaaataaagacaag |
52268729 |
T |
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