View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1360_low_1 (Length: 649)
Name: NF1360_low_1
Description: NF1360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1360_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Complemental strand, 12013800 - 12013225
Alignment:
| Q |
11 |
cacagacacaacactgagacaccaaatacacctttaatctgaagtgtcagttattgctacttagaaaaagctacatgctagaatctcatcagaactaagg |
110 |
Q |
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| T |
12013800 |
cacagacacaacactgagacaccaaatacacctttaa-----agtgtcagttattgctacttagaaaaagctacatgctagaatctcatgagaactaagg |
12013706 |
T |
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| Q |
111 |
acatgtttgatttgatgatacaaaatggaatcagttaagaggaaaacctctttatcaacagggtgacgaaaatcatcagcatcaaggtcacgaaagacta |
210 |
Q |
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| T |
12013705 |
acatgtttggattgatgatacaaaatggaatcagttaagaggaaaacctctttatcaacagggtgacgaaaatcatcagcatcaaggtcacgaaagacta |
12013606 |
T |
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| Q |
211 |
aa------gcagcnnnnnnnnnnnnnnnnncagcagctctagaaacagttaatccagctggtttgtgattgttgtgaacccgaatgaaccggatctttga |
304 |
Q |
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| T |
12013605 |
aagcagcagcagaagaagaagaagatgaagcagcagctctagaaacagttaatccagctggtttgtgattgttgtgaacccgaatgaaccggatctttga |
12013506 |
T |
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| Q |
305 |
actggcaccgaaccgggctctatccgaaggcgaagcaacgaaagcgagtggctgagaaaagaaagaaacggaagccatggagatggaattgtaagaagag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12013505 |
actggcaccgaaccgggctctatccgaaggcgaagcaacgaaagcgagtggctgagaaaagaaagaaacggaagccatggagatggaattgtaagatgag |
12013406 |
T |
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| Q |
405 |
agatagaaatggaatgaggattgtgtagcgtggtgatattattattattatttggggcttcaagttgaaagttagttacgggttgacgtaaaggaagtga |
504 |
Q |
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| T |
12013405 |
agatagaaatggaatgcggattgtgtagcgtgatgatattattattattatttggggcttcaagttgaaagttagttacgggttgacgtaaaggaagtga |
12013306 |
T |
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| Q |
505 |
caaccacagctgtgggaaaggaaatgggtatggtaattctttcgcgccacttccttgtctccaatgtatgttgttgccatg |
585 |
Q |
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| T |
12013305 |
caaccacagctgtgggaaaggaaatgggtatggtaattctttcgcgccacttccttgtctccaatgtatgttgttgccatg |
12013225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 4216054 - 4216022
Alignment:
| Q |
29 |
acaccaaatacacctttaatctgaagtgtcagt |
61 |
Q |
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| T |
4216054 |
acaccaaatacacctttaatctgaagtgtcagt |
4216022 |
T |
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