View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1360_low_2 (Length: 379)

Name: NF1360_low_2
Description: NF1360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1360_low_2
NF1360_low_2
[»] chr5 (5 HSPs)
chr5 (40-267)||(12709400-12709625)
chr5 (40-267)||(12770650-12770875)
chr5 (333-370)||(12709297-12709334)
chr5 (333-370)||(12770547-12770584)
chr5 (191-256)||(35584020-35584085)
[»] chr8 (6 HSPs)
chr8 (190-267)||(5793477-5793554)
chr8 (191-267)||(8545469-8545545)
chr8 (191-265)||(29918501-29918575)
chr8 (191-265)||(17108268-17108344)
chr8 (191-267)||(6388625-6388701)
chr8 (191-267)||(36274935-36275010)
[»] scaffold0157 (1 HSPs)
scaffold0157 (191-256)||(14761-14826)
[»] chr4 (7 HSPs)
chr4 (191-256)||(12505651-12505716)
chr4 (191-267)||(21714096-21714172)
chr4 (197-254)||(7334310-7334367)
chr4 (191-236)||(36919052-36919097)
chr4 (188-265)||(39086056-39086133)
chr4 (191-231)||(37384207-37384247)
chr4 (191-231)||(42907821-42907861)
[»] chr7 (2 HSPs)
chr7 (199-267)||(6557854-6557922)
chr7 (190-251)||(31345439-31345500)
[»] chr2 (5 HSPs)
chr2 (191-266)||(35248501-35248576)
chr2 (191-242)||(13531867-13531918)
chr2 (191-236)||(25210301-25210346)
chr2 (191-236)||(30696848-30696893)
chr2 (191-231)||(31600888-31600928)
[»] chr6 (2 HSPs)
chr6 (191-267)||(10925563-10925639)
chr6 (197-254)||(34346140-34346197)
[»] chr1 (3 HSPs)
chr1 (191-256)||(42729064-42729129)
chr1 (191-267)||(39219151-39219227)
chr1 (189-237)||(43513147-43513195)
[»] chr3 (1 HSPs)
chr3 (191-256)||(37032218-37032283)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 40 - 267
Target Start/End: Complemental strand, 12709625 - 12709400
Alignment:
Q  40 ttttttctgatttaattgggtatagatatgagtttatgttttcttcaattttaaaacacgaatatgagaagggtatcagagatataaatactcatcttga 139  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  12709625 ttttttctgatttaattgggtataaatatgagtttatgttttcttcaattttaaaacacgaatatgagacgggtattagagatataaatactcatcttga 12709526  T
Q  140 actcatacttaaatatacttcaaatgtnnnnnnnntcaatttatctttcctttttacataaatagaaattcaaacactaaatcatttcactcgcacaacc 239  Q
    |||||||||||||||| ||||||||||        ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12709525 actcatacttaaatatgcttcaaatgt--aaaaaatcaatttatcttttctttttacataaatagaaattcaaaccctaaatcatttcactcgtacaacc 12709428  T
Q  240 aaagtctcagtctttcaaacgacactca 267  Q
    ||||||||||||||||||||||||||||    
T  12709427 aaagtctcagtctttcaaacgacactca 12709400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 40 - 267
Target Start/End: Complemental strand, 12770875 - 12770650
Alignment:
Q  40 ttttttctgatttaattgggtatagatatgagtttatgttttcttcaattttaaaacacgaatatgagaagggtatcagagatataaatactcatcttga 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  12770875 ttttttctgatttaattgggtatagatatgagtttatgttttcttcaattttaaaacacgaatatgagacgggtattagagatataaatactcatcttga 12770776  T
Q  140 actcatacttaaatatacttcaaatgtnnnnnnnntcaatttatctttcctttttacataaatagaaattcaaacactaaatcatttcactcgcacaacc 239  Q
    |||||||||||||||| ||||||||||        ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12770775 actcatacttaaatatgcttcaaatgt--aaaaaatcaatttatcttttctttttacataaatagaaattcaaaccctaaatcatttcactcgtacaacc 12770678  T
Q  240 aaagtctcagtctttcaaacgacactca 267  Q
    |||||||| |||||||||||||||||||    
T  12770677 aaagtctcggtctttcaaacgacactca 12770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 12709334 - 12709297
Alignment:
Q  333 catacccttggtctctctcttctctatcaccaacggtc 370  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12709334 catacccttggtctctctcttctctatcaccaacggtc 12709297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 12770584 - 12770547
Alignment:
Q  333 catacccttggtctctctcttctctatcaccaacggtc 370  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12770584 catacccttggtctctctcttctctatcaccaacggtc 12770547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 35584085 - 35584020
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 256  Q
    ||||| ||||||||||| |||||| |||||||||||  ||| ||||  || |||||||||||||||    
T  35584085 ttttatataaatagaaactcaaaccctaaatcattttgctcacacagtcagagtctcagtctttca 35584020  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 5793554 - 5793477
Alignment:
Q  190 tttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  5793554 tttttatataaatagaaactcaaaccctaaatcatttcactcacacaaccaaagtctaagtctttctgacgacactca 5793477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 8545469 - 8545545
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||| ||||| |||||| ||||| ||||||||||||||||  | | ||| |||||| |||||||||| ||||||||    
T  8545469 ttttatataaacagaaatccaaaccctaaatcatttcactcaaatagccagagtctcggtctttcaaatgacactca 8545545  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 29918575 - 29918501
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacact 265  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||   | ||||||| ||||||| | ||||||    
T  29918575 ttttatataaatagaaactcaaaccctaaatcatttcactcacacagttagagtctcaatctttcagatgacact 29918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 17108344 - 17108268
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaa--gtctcagtctttcaaacgacact 265  Q
    ||||| ||||||||||| | |||| |||||| ||||||||| ||||| ||||  ||||| || ||||||||||||||    
T  17108344 ttttatataaatagaaacttaaaccctaaataatttcactcacacaatcaaagtgtctcggtatttcaaacgacact 17108268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 6388625 - 6388701
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||| ||||| |||||  ||||| |||||||||||||||| |||||  | |||||||| |||| ||| ||||||||    
T  6388625 ttttatataaacagaaacccaaaccctaaatcatttcactcacacaattagagtctcagactttaaaatgacactca 6388701  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 36275010 - 36274935
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||| |||||||||||  ||| | |||||||||||||||| ||||  ||||||||| |||||||| | ||||||||    
T  36275010 ttttatataaatagaaacccaacc-ctaaatcatttcactcacacagtcaaagtctcggtctttcagatgacactca 36274935  T

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Target: scaffold0157 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 14826 - 14761
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 256  Q
    ||||| ||||||||||| | ||||| |||||||||||| |||||||| ||||||||||||||||||    
T  14826 ttttatataaatagaaacttaaacattaaatcatttcattcgcacaatcaaagtctcagtctttca 14761  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 12505651 - 12505716
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 256  Q
    ||||| ||||||||||| | ||||| |||||||||||| |||||||| ||||||||||||||||||    
T  12505651 ttttatataaatagaaacttaaacattaaatcatttcattcgcacaatcaaagtctcagtctttca 12505716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 21714096 - 21714172
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||| ||||||||||| |||||| |||||||||||||||  |||||  | ||||||||||| ||||| ||||||||    
T  21714096 ttttatataaatagaaactcaaaccctaaatcatttcacttacacaattagagtctcagtctctcaaatgacactca 21714172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 7334310 - 7334367
Alignment:
Q  197 ataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtcttt 254  Q
    ||||||||||| |||||| |||||||||||||||| ||||   |||||||||||||||    
T  7334310 ataaatagaaactcaaactctaaatcatttcactcacacagttaaagtctcagtcttt 7334367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 36919097 - 36919052
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcaca 236  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  36919097 ttttatataaatagaaactcaaactctaaatcatttcactcacaca 36919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 39086133 - 39086056
Alignment:
Q  188 cctttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacact 265  Q
    |||||||| ||||||||||| | |||| |||||||||||||||| ||||  || | ||||||| ||||| | ||||||    
T  39086133 cctttttatataaatagaaacttaaaccctaaatcatttcactcacacagtcagactctcagtttttcagatgacact 39086056  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 37384247 - 37384207
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactc 231  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  37384247 ttttatataaatagaagttcaaaccctaaatcatttcactc 37384207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 42907861 - 42907821
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactc 231  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  42907861 ttttatataaatagaaactcaaaccctaaatcatttcactc 42907821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 6557854 - 6557922
Alignment:
Q  199 aaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||||||  |||||| |||||||||||||||| ||||| |||||||||||||||||| | ||||||||    
T  6557854 aaatagaatctcaaactctaaatcatttcactcacacaatcaaagtctcagtctttcagatgacactca 6557922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 31345500 - 31345439
Alignment:
Q  190 tttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtc 251  Q
    |||||| ||||||||||| |||||| ||| |||||||||||| ||||| |||||||||||||    
T  31345500 tttttatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtc 31345439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 35248501 - 35248576
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactc 266  Q
    ||||| ||||||||||| | |||| |||||||||||||||| ||||  || ||||||||||||||||| |||||||    
T  35248501 ttttatataaatagaaaatgaaaccctaaatcatttcactcacacagacagagtctcagtctttcaaatgacactc 35248576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 13531918 - 13531867
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaa 242  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  13531918 ttttatataaatagaaactcaaaccctaaatcatttcactcacacaatcaaa 13531867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 25210346 - 25210301
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcaca 236  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  25210346 ttttatataaatagaaactcaaaccctaaatcatttcactcacaca 25210301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 30696893 - 30696848
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcaca 236  Q
    ||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  30696893 ttttatataaatagaaattcaaaccctaaatcatgtcactcacaca 30696848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 31600888 - 31600928
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactc 231  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  31600888 ttttatataaatagaaactcaaactctaaatcatttcactc 31600928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 10925563 - 10925639
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||| ||||||||||  | |||| |||||||||||||||  ||||| |||||| | ||||||||||||||||||||    
T  10925563 ttttatataaatagaatctgaaaccctaaatcatttcactaacacaatcaaagttttagtctttcaaacgacactca 10925639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 34346140 - 34346197
Alignment:
Q  197 ataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtcttt 254  Q
    |||||||||||  ||||| |||||||||||||||| ||||  || |||||||||||||    
T  34346140 ataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtctcagtcttt 34346197  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 42729064 - 42729129
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 256  Q
    ||||| ||||||||||| | | ||||||||||||||||||| ||||  || |||||||||||||||    
T  42729064 ttttatataaatagaaacttatacactaaatcatttcactcacacagtcagagtctcagtctttca 42729129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 39219227 - 39219151
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttcaaacgacactca 267  Q
    ||||| ||||||||||| |||||| |||||||||||| ||| ||||  || ||||||| | ||||| | ||||||||    
T  39219227 ttttatataaatagaaactcaaaccctaaatcatttcgctcacacagtcacagtctcattttttcatatgacactca 39219151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 43513147 - 43513195
Alignment:
Q  189 ctttttacataaatagaaattcaaacactaaatcatttcactcgcacaa 237  Q
    ||||||| ||||||||||| |||||| |||||| |||||||||| ||||    
T  43513147 ctttttatataaatagaaactcaaaccctaaataatttcactcgtacaa 43513195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 37032218 - 37032283
Alignment:
Q  191 ttttacataaatagaaattcaaacactaaatcatttcactcgcacaaccaaagtctcagtctttca 256  Q
    ||||| ||||||| ||| |||||| ||||||||||||||||  |||| || |||||| ||||||||    
T  37032218 ttttatataaataaaaactcaaaccctaaatcatttcactcatacaatcagagtctcggtctttca 37032283  T

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