View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1360_low_5 (Length: 250)
Name: NF1360_low_5
Description: NF1360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1360_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 12709184 - 12708946
Alignment:
| Q |
1 |
gatactcaaacctgtcaggaacatgaatgagatttaatttctcatatttgttgagtatggtagggtacccgataagtacttgagaatatgatatggggac |
100 |
Q |
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| T |
12709184 |
gatactcaaacctgtcgggaacatgaatgagatttaatttctcatatttgttgagtatggtagggtacccggtaagtacttgagaatatgatatggggac |
12709085 |
T |
|
| Q |
101 |
ggagaatgtaaatttcattcctaccccgcccattaccatgcctactcggacgcatgtgtgaagatcaatttctcactaacaaaaatctatttaaagagtt |
200 |
Q |
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| T |
12709084 |
ggagaatgtaaattccattcctaccccgcccattaccatgcctactcggacgcatgtgtgaagatcaatttctcactaacaaagatctatttaaagagtt |
12708985 |
T |
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| Q |
201 |
aacatcttttagcatatt-ttttcatacacatttgatat |
238 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
12708984 |
aacatcttttagcatatttttttcatacacatttgatat |
12708946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 12770434 - 12770197
Alignment:
| Q |
2 |
atactcaaacctgtcaggaacatgaatgagatttaatttctcatatttgttgagtatggtagggtacccgataagtacttgagaatatgatatggggacg |
101 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12770434 |
atactcaaacctgtcgggaacatgaatgagatttaatttctcatatttgttgagtatggtagggtacccggtaagtacttgagaatatgatatggggacg |
12770335 |
T |
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| Q |
102 |
gagaatgtaaatttcattcctaccccgcccattaccatgcctactcggacgcatgtgtgaagatcaatttctcactaacaaaaatctatttaaagagtta |
201 |
Q |
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| T |
12770334 |
gagaatgtaaattccattcctaccccgcccattaccatgcctactcggacgcatgtgtgaagatcaatttctcactaacaaagatctatttaaagagtta |
12770235 |
T |
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| Q |
202 |
acatcttttagcatatt-ttttcatacacatttgatat |
238 |
Q |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
12770234 |
acatcttttagcatatttttttcatacacatttgatat |
12770197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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