View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_high_1 (Length: 811)
Name: NF13610_high_1
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 724; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 16 - 794
Target Start/End: Complemental strand, 40505608 - 40504829
Alignment:
| Q |
16 |
tattattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaa |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40505608 |
tattattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaa |
40505509 |
T |
|
| Q |
116 |
aatgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgaaacaatttctgtcctcggact-gtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
40505508 |
aatgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgacacaatttctgtcctcggacttgtt |
40505409 |
T |
|
| Q |
215 |
attctcttttcatacattatgctaataattagtgtttgtttacatagaccgttagatcgataaaatcacggtggttcaccactccaatgtgcaacttttg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40505408 |
attctcttttcatacattatgctaataattagtgtttgtttacatagaccattagatcgataaaatcacggtagttcaccactccaatgtgcaacttttg |
40505309 |
T |
|
| Q |
315 |
ctaaaattacgttgactcgccatggttctgccaatctcaccgtcaatccaaacatgtactcggtggttctcaacttgctataaaacggccttggtgattg |
414 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
40505308 |
ctaaaattacgttgactcaccatggttctgtcaatctcaccgtcaatccaaacatgtacttggtggttctcaacttgctataaaaaggccttggtgattg |
40505209 |
T |
|
| Q |
415 |
ctatcatgtaacttgttgaaggttaatcaattttcttttctggggcccaacattttagcttagtttacaacctgagaggaatttctcagtttgtctcaaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40505208 |
ctatcatgtaacttgttgaaggttaatcaattttcttttctggggcccaacattttagcttagtttacaagctgagaggaatttctcagtttgtctcaaa |
40505109 |
T |
|
| Q |
515 |
ctttctacaactgcatgatattataggattgtacatgattgaatagcactctccactctcattgaccagagtgatgagatattcaaatggaagctaagac |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505108 |
ctttctacaactgcatgatattataggattgtacatgattgaatagcactctccactctcattgaccagagtgatgagatattcaaatggaagctaagac |
40505009 |
T |
|
| Q |
615 |
atatttctttcttgtacgtgagcggctaaaaataagcatactcattgtggaatgtgtcaaaaattacagaccattgcgatcgagcccaaaaatgagtgtc |
714 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505008 |
atatttctttcttgtacgtgagtggctaaaaataagcatactcattgtggaatgtgtcaaaaattacagaccattgcgatcgagcccaaaaatgagtgtc |
40504909 |
T |
|
| Q |
715 |
gtcccgaacttaacacgatggatgaggtaacacttcctaagaccaattggttcgccagaaagtcggttactaatagatac |
794 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40504908 |
gtcccgaccttaacacgatggatgaggtaacacttcctaagaccaattggttcgccagaaagtcggttactaatagatac |
40504829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 22138099 - 22137854
Alignment:
| Q |
16 |
tattattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
22138099 |
tattattctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaa |
22138000 |
T |
|
| Q |
116 |
aatgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgaaacaatttctgtcctcggac-tgtt |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
22137999 |
aatgcatattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgacacaatttctgtcctcggacttgtt |
22137900 |
T |
|
| Q |
215 |
attctcttttcatacattatgctaataattagtgtttgtttacatag |
261 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22137899 |
attctcttttcataca-tatgctaataattagtgtttgtttacatag |
22137854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 691 - 769
Target Start/End: Complemental strand, 16300762 - 16300684
Alignment:
| Q |
691 |
cgatcgagcccaaaaatgagtgtcgtcccgaacttaacacgatggatgaggtaacacttcctaagaccaattggttcgc |
769 |
Q |
| |
|
||||| |||||| |||||||||||||||| | ||||||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
16300762 |
cgatcaagcccataaatgagtgtcgtcccaaccttaacatgatggatgaggaaacactccctaagaccaattggttcgc |
16300684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 707 - 769
Target Start/End: Original strand, 16253739 - 16253801
Alignment:
| Q |
707 |
tgagtgtcgtcccgaacttaacacgatggatgaggtaacacttcctaagaccaattggttcgc |
769 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
16253739 |
tgagtgtcatcccgaccttaacatgatggatgaggaaacactccctaagaccaattggttcgc |
16253801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 764
Target Start/End: Complemental strand, 21671357 - 21671303
Alignment:
| Q |
710 |
gtgtcgtcccgaacttaacacgatggatgaggtaacacttcctaagaccaattgg |
764 |
Q |
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|
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
21671357 |
gtgtcgttacgaccttaacacgatggatgaggtaacactccctaagaccaattgg |
21671303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 764
Target Start/End: Complemental strand, 21678773 - 21678719
Alignment:
| Q |
710 |
gtgtcgtcccgaacttaacacgatggatgaggtaacacttcctaagaccaattgg |
764 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
21678773 |
gtgtcgttacgaccttaacacgatggatgaggtaacactccctaagaccaattgg |
21678719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 723 - 766
Target Start/End: Original strand, 5370588 - 5370631
Alignment:
| Q |
723 |
cttaacacgatggatgaggtaacacttcctaagaccaattggtt |
766 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
5370588 |
cttaacacgatggatgaggtaacactccctaataccaattggtt |
5370631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 768
Target Start/End: Complemental strand, 11488846 - 11488801
Alignment:
| Q |
723 |
cttaacacgatggatgaggtaacacttcctaagaccaattggttcg |
768 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |||||| |
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|
| T |
11488846 |
cttaacacaatggatgaggtaacactttctaagaccaataggttcg |
11488801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 725 - 763
Target Start/End: Original strand, 3403994 - 3404032
Alignment:
| Q |
725 |
taacacgatggatgaggtaacacttcctaagaccaattg |
763 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
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| T |
3403994 |
taacacggtggatgaggtaacactccctaagaccaattg |
3404032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 776
Target Start/End: Original strand, 4780904 - 4780957
Alignment:
| Q |
723 |
cttaacacgatggatgaggtaacacttcctaagaccaattggttcgccagaaag |
776 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||||| |||| |||| |
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|
| T |
4780904 |
cttaacacgatggatgaggtaacacacccttagactaattggtttgccataaag |
4780957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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