View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_high_2 (Length: 767)
Name: NF13610_high_2
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 520 - 755
Target Start/End: Original strand, 410133 - 410368
Alignment:
| Q |
520 |
ttgataatttttgcaggaaaatggctaagaagcaagtatgtgggagtatctatggttgggaaaacattagcaataatgggatttggaaaagttggatctg |
619 |
Q |
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| T |
410133 |
ttgataatttttgcaggaaaatggctgagaagcaagtatgttggagtatctatggttgggaaaacattagcaataatggggtttggaaaagttggatctg |
410232 |
T |
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| Q |
620 |
aagttgcaaggcgtgcaaaaggattaggaatgaatgtgattgctcatgacccttatgctccagctgatagagcacgtgctgttggtgtggaattagtctc |
719 |
Q |
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| T |
410233 |
aagttgcaaggcgtgcaaaaggattaggaatgaatgtgattgctcatgacccttatgctccagctgatagagcacgtgctgttggtgtggaattagtttc |
410332 |
T |
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| Q |
720 |
atttgatcaagcaatcacaaccgctgatttcatctc |
755 |
Q |
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| T |
410333 |
atttgatcaagcaatcacaaccgctgatttcatctc |
410368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 409620 - 409833
Alignment:
| Q |
19 |
aagttgaaagttgttggtagagctggtgttgggattgataatgtggatctacaagctgctactgaatttggttgtcttgttgtgaatgctcctacagcta |
118 |
Q |
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| T |
409620 |
aagttgaaagttgttggtagagctggtgttgggattgataatgtggatctacaagctgctactgaatttggttgtcttgttgtgaatgctcctactgcta |
409719 |
T |
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| Q |
119 |
atactattgctgctgctgaacatgggattgctcttcttgctgctatggctcgtaacgtttctcaagctgatgcttcccttaaagcaggtatggtacatgt |
218 |
Q |
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| T |
409720 |
atactattgctgctgctgaacatgggattgctcttcttgctgctatggctcgtaacgtttctcaagctgatgcttcccttaaagctggtatggtacattt |
409819 |
T |
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| Q |
219 |
tcatgatttatctt |
232 |
Q |
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| T |
409820 |
acatgatttatctt |
409833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 48784678 - 48784796
Alignment:
| Q |
28 |
gttgttggtagagctggtgttgggattgataatgtggatctacaagctgctactgaatttggttgtcttgttgtgaatgctcctacagctaatactattg |
127 |
Q |
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| T |
48784678 |
gttgttggtagagctggtgttggtattgataacgtggatctggccgccgctactgaacatggttgcttggttgttaatgctcccactgctaacactgttg |
48784777 |
T |
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| Q |
128 |
ctgctgctgaacatgggat |
146 |
Q |
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| T |
48784778 |
ccgccgctgaacacgggat |
48784796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 687
Target Start/End: Original strand, 48785408 - 48785548
Alignment:
| Q |
547 |
agaagcaagtatgtgggagtatctatggttgggaaaacattagcaataatgggatttggaaaagttggatctgaagttgcaaggcgtgcaaaaggattag |
646 |
Q |
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| T |
48785408 |
agaagtaagtatgttggagtttccctagttgggaagacacttgctgtaatgggatttgggaaggttggaactgaggttgctaggcgtgctaaggggcttg |
48785507 |
T |
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| Q |
647 |
gaatgaatgtgattgctcatgacccttatgctccagctgat |
687 |
Q |
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| T |
48785508 |
gtatgaaggttattgctcatgatccttatgctcctgctgat |
48785548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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