View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_high_22 (Length: 228)
Name: NF13610_high_22
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 25258636 - 25258830
Alignment:
| Q |
21 |
atcagcaccagatttaagcacaccaaagcacattctaacacactccactctctccctcaaaccatcttccatttcccattgaacaacctgcgacgacaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25258636 |
atcagcaccagatttaagcacaccaaagcacattctaacacactccactctctctctcaaaccatcttccatttcccattgaacaacctgcgacgacaca |
25258735 |
T |
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| Q |
121 |
ttcctctccaattcgcttcttaactcctctaccgatgccctcgcgtgcctaaattcgtacaacaacatccccggctctgcttcgctcatctctgc |
215 |
Q |
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| T |
25258736 |
ttcctctccaattcgcctcttagctcctctaccgatgccctcgcgtgcctaaattcgtacaacaacatccccggctctgcttcgctcatctctgc |
25258830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 25322426 - 25322620
Alignment:
| Q |
21 |
atcagcaccagatttaagcacaccaaagcacattctaacacactccactctctccctcaaaccatcttccatttcccattgaacaacctgcgacgacaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322426 |
atcagcaccagatttaagcacaccaaagcacattctaacacactccactctctctctcaaaccatcttccatttcccattgaacaacctgcgacgacaca |
25322525 |
T |
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| Q |
121 |
ttcctctccaattcgcttcttaactcctctaccgatgccctcgcgtgcctaaattcgtacaacaacatccccggctctgcttcgctcatctctgc |
215 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322526 |
ttcctctccaattcgcctcttagctcctctaccgatgccctcgcgtgcctaaattcgtacaacaacatccccggctctgcttcgctcatctctgc |
25322620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 16706622 - 16706683
Alignment:
| Q |
69 |
tctctccctcaaaccatcttccatttcccattgaacaacctgcgacgacacattcctctcca |
130 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||| | || |||||||| |||||| |
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| T |
16706622 |
tctctccctcaaaccaacttccatttcccattgaacgaccttcaacaacacattcatctcca |
16706683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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