View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13610_low_1 (Length: 967)
Name: NF13610_low_1
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 261 - 956
Target Start/End: Complemental strand, 12846324 - 12845629
Alignment:
| Q |
261 |
cccttttcactgcctcgttgttcagtttaaagggtttgacttgtcttgatttgtccttttcgtgtgtcgaggataaactcttgttctctcttgcagagga |
360 |
Q |
| |
|
||||||| | |||||| ||||||||||| ||||||||||||| ||||||||| || ||||||| | | |||||| ||||| |||||||| |||||| | |
|
|
| T |
12846324 |
cccttttaagtgcctccttgttcagtttgaagggtttgacttatcttgatttctcgttttcgtataccccggataagctcttcttctctctcgcagagaa |
12846225 |
T |
|
| Q |
361 |
atgtcttcctttgaggaggcttggcttccaatgttgttttggttatagttatagtggaatctaccgtttgttatctaagtgtcaatctcttcaacatttg |
460 |
Q |
| |
|
| | |||||||||||||| |||| || || ||| |||||||||||||||| |||||||| || |||||||| |||||||||| | |||||||| |
|
|
| T |
12846224 |
aggacttcctttgaggagtcttgttctcaaagattgctttggttatagttatactggaatctttcgcttgttatccaagtgtcaattattacaacattta |
12846125 |
T |
|
| Q |
461 |
aatcttcaaaaggccaactttttgtatgaccaacattttgctaggttgtctttgttccttgctgatttgatttctataaacgttagtttttgtagcaatc |
560 |
Q |
| |
|
|||||||| | | | |||||| |||| |||||| |||||| ||| |||||| | |||| |||||||||||||||||||||||||||||||| | | |
|
|
| T |
12846124 |
gatcttcaactgactgagtttttgaatgatcaacatgttgctaagttatctttgcttcttggtgatttgatttctataaacgttagtttttgtaagcagc |
12846025 |
T |
|
| Q |
561 |
tcacggaatcaacattgtttgcatttgctaaaaactgtcctttactcgccgatatcaacatggaggaaactagtattgggaaaat-gattgtggagaatc |
659 |
Q |
| |
|
| || ||| |||| ||||||| | | ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | ||| |||||||| |
|
|
| T |
12846024 |
taacagaaacaactttgtttgagctagttaaaaactgtcctttactcgctgatatcaatatggaggagactagtattgggaaaacaggttg-ggagaatc |
12845926 |
T |
|
| Q |
660 |
cgaattcttcgatggattttgttgtaagccctcaagtgaactctcttcatttgaagggcaatgcatggttggcggatgaaagcatccaaatatttgctac |
759 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||| || ||| |
|
|
| T |
12845925 |
caaattcttcgatggatttggttgtaagccctcgagtgaagtctcttcgtttgaagggcaatgcatggttgagggacaaaagcatccaaatgttcgctga |
12845826 |
T |
|
| Q |
760 |
ctttttcccaaatttggagcttcttgatttgagctcttgttattgtatatttgaaggtgttggtgaagttttgaggagatgttgtaatattaaacattta |
859 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| | ||| |||| |||||| |
|
|
| T |
12845825 |
tttttttccgaatttggagctacttgatttgagctcttgttattgcgtatttgttggtgttggtgaagttttaaggagaagcgataagattagacatttg |
12845726 |
T |
|
| Q |
860 |
agcttggcctcctctttcggcgctaagctatttgaaatgaactttgtagttcccaaattggaggtattgaacttgtctcgatccgcaactgatgatg |
956 |
Q |
| |
|
|| || |||||||| ||||| || |||||| |||| |||||| ||| |||||||||||| ||||||||||||||||| || ||||| || ||||||| |
|
|
| T |
12845725 |
agtttagcctcctccttcggagccaagctacttgagatgaaccttgaagttcccaaattagaggtattgaacttgtcccggtccgcgaccgatgatg |
12845629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 12846554 - 12846374
Alignment:
| Q |
34 |
ggccctccccaagctccgtaaaattaatctatccggtaataacatctcggatcaatcacttttttatttatgcaagaattgtgagtttctccaagagatc |
133 |
Q |
| |
|
|||||| ||||| || ||||| |||||||| ||||||| | ||| || ||| ||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12846554 |
ggcccttcccaacctacgtaagattaatctctccggtactttcatgtcagatacatcacttttatatttatgcaagaattgcaagtttctcgaagagatc |
12846455 |
T |
|
| Q |
134 |
gagatgatat-ctgtatatcatataactgttgccggagttgcttctgctatccgcgagagaccaggtttgaggtgtttgtct |
214 |
Q |
| |
|
| ||| || |||| | | |||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
12846454 |
gtgattattcgctgt-tgtgttataactgttttcggagttgcttctgccatccgtgaaagaccaggtttgaggtgtttgtct |
12846374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 893 - 936
Target Start/End: Complemental strand, 32267574 - 32267531
Alignment:
| Q |
893 |
gaaatgaactttgtagttcccaaattggaggtattgaacttgtc |
936 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32267574 |
gaaatgaactttgaagttcccaaattggaggtattgaacttgtc |
32267531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 884 - 933
Target Start/End: Original strand, 41889545 - 41889594
Alignment:
| Q |
884 |
aagctatttgaaatgaactttgtagttcccaaattggaggtattgaactt |
933 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41889545 |
aagctacttgaaatgaactttaaagttcccaaattggaggtgttgaactt |
41889594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 38266942 - 38266976
Alignment:
| Q |
283 |
cagtttaaagggtttgacttgtcttgatttgtcct |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38266942 |
cagtttaaaggctttgacttgtcttgatttgtcct |
38266976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 893 - 936
Target Start/End: Complemental strand, 27922607 - 27922564
Alignment:
| Q |
893 |
gaaatgaactttgtagttcccaaattggaggtattgaacttgtc |
936 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
27922607 |
gaaatgaactttgaagttcccaaattggaggtgttgaacttgtc |
27922564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 895 - 936
Target Start/End: Original strand, 17636403 - 17636444
Alignment:
| Q |
895 |
aatgaactttgtagttcccaaattggaggtattgaacttgtc |
936 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
17636403 |
aatgaactttgaagttcccaaattggaggtgttgaacttgtc |
17636444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 894 - 936
Target Start/End: Complemental strand, 7307958 - 7307916
Alignment:
| Q |
894 |
aaatgaactttgtagttcccaaattggaggtattgaacttgtc |
936 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7307958 |
aaatgaactttaaagttcccaaattggaggtattgaacttgtc |
7307916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 887 - 936
Target Start/End: Complemental strand, 547018 - 546969
Alignment:
| Q |
887 |
ctatttgaaatgaactttgtagttcccaaattggaggtattgaacttgtc |
936 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
547018 |
ctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtc |
546969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 895 - 936
Target Start/End: Original strand, 51120895 - 51120936
Alignment:
| Q |
895 |
aatgaactttgtagttcccaaattggaggtattgaacttgtc |
936 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
51120895 |
aatgaactttgaagttctcaaattggaggtgttgaacttgtc |
51120936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 851
Target Start/End: Original strand, 51764281 - 51764398
Alignment:
| Q |
734 |
gatgaaagcatccaaatatttgctacctttttcccaaatttggagcttcttgatttgagctcttgttattgtatatttgaaggtgttggtgaagttttga |
833 |
Q |
| |
|
|||||||||||| ||| |||||| || ||||||| |||||| |||| |||||||| | ||||| || | |||| | ||||||| |||||||||| | |
|
|
| T |
51764281 |
gatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaa |
51764380 |
T |
|
| Q |
834 |
ggagatgttgtaatatta |
851 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
51764381 |
ggagatgttctaagatta |
51764398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University