View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_10 (Length: 480)
Name: NF13610_low_10
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 222 - 463
Target Start/End: Complemental strand, 48415604 - 48415356
Alignment:
| Q |
222 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctg-------tacaatg |
314 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
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| Q |
315 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtnnnnnnntatctatcttgacattgtatatgaattaaatccg |
414 |
Q |
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| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatatgaattaaatccg |
48415405 |
T |
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| Q |
415 |
ttcacattacggatgtttgtgttggcattttcaggaaagcattcaacaa |
463 |
Q |
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| T |
48415404 |
ctcacattacggatgtttgtgttggcattttcaggaaagcattcaacaa |
48415356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 48415821 - 48415684
Alignment:
| Q |
11 |
agaaaatcaacatttttatcaatcacatgaggcacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaat |
110 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48415821 |
agaatatcaacatttttatcaatcacatgaggtacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaat |
48415722 |
T |
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| Q |
111 |
cgttacatcgaatgcgaaggatccaatgccagagtatc |
148 |
Q |
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| T |
48415721 |
cgttacattgaatgcgaaggatccaatgccagagtatc |
48415684 |
T |
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