View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_12 (Length: 398)
Name: NF13610_low_12
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 13888450 - 13888081
Alignment:
| Q |
18 |
ataatttttgtttcattttttgttgttgttctgattaggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcaggg |
117 |
Q |
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| T |
13888450 |
ataatttttgtttcattttttgttgttgttctgattaggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcaggg |
13888351 |
T |
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| Q |
118 |
ataagggaagaattctttgtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacagatcttaagagataatgact |
217 |
Q |
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| T |
13888350 |
ataagggaagaattctttgtttatttgaatgacatgtatcaatatccttctcccgttgaagaaggcatacttcaagtacagatcttaagagataatgact |
13888251 |
T |
|
| Q |
218 |
cctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattg |
317 |
Q |
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| T |
13888250 |
cctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattg |
13888151 |
T |
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| Q |
318 |
tattttgcttgttataatacattggtattgatagtagggagtagagtggacccacaagtgagatatgatg |
387 |
Q |
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| T |
13888150 |
tattttgcttgttataatacattggtattgatagtagggagtagagtggacccacaagtgagatatgatg |
13888081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 14028575 - 14028206
Alignment:
| Q |
18 |
ataatttttgtttcattttttgttgttgttctgattaggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcaggg |
117 |
Q |
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| T |
14028575 |
ataatttttgtttcattttttgttgttgttctgattaggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcaggg |
14028476 |
T |
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| Q |
118 |
ataagggaagaattctttgtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacagatcttaagagataatgact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14028475 |
ataagggaagaattctttgtttatttgaatgacatgtatcaatatccttctcccgttgaagaaggcatacttcaagtacagatcttaagagataatgact |
14028376 |
T |
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| Q |
218 |
cctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattg |
317 |
Q |
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| T |
14028375 |
cctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattg |
14028276 |
T |
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| Q |
318 |
tattttgcttgttataatacattggtattgatagtagggagtagagtggacccacaagtgagatatgatg |
387 |
Q |
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| T |
14028275 |
tattttgcttgttataatacattggtattgatagtagggagtagagtggacccacaagtgagatatgatg |
14028206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 33 - 387
Target Start/End: Complemental strand, 7689298 - 7688942
Alignment:
| Q |
33 |
ttttttgttgttgttctgattaggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcagggataagggaagaattc |
132 |
Q |
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|||||| || || ||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||||| | | ||||| |
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| T |
7689298 |
ttttttcttcttcttcggatcaggttattgtgacggtgtaaaaagtgttgtcaatggatctggtttaaacgattcagttgttgggataagagcacaattc |
7689199 |
T |
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| Q |
133 |
tttgtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacagatcttaagagataatgactcctacagtgtttcgc |
232 |
Q |
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| T |
7689198 |
tcggtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacaaatcttaagagatgatgactcctacagtgtttcgc |
7689099 |
T |
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| Q |
233 |
cgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattgtattttgcttgttat |
332 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7689098 |
cgatcatatatcccatgttaaacaaaactggtatttcaaaggataaactctttttgattacattcctttctacatttgataattgtattttgcttgttat |
7688999 |
T |
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| Q |
333 |
a--atacattggtattgatagtagggagtagagtggacccacaagtgagatatgatg |
387 |
Q |
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| T |
7688998 |
aatatacattggtattgatattagggagtagagtggactcaggagtgagatatgatg |
7688942 |
T |
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