View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_13 (Length: 381)
Name: NF13610_low_13
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 45500486 - 45500838
Alignment:
| Q |
19 |
ataaatacattcataattaaggttgttgatatcattattacaaaggccagatttcacaattttccccaatttatttagatgcggatttgacaaccttact |
118 |
Q |
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| T |
45500486 |
ataaatacattcataattaaggttgttgatatcattattacaaaggccagatttcacaattttccccaatttatttagatgcggatttgacaaccatact |
45500585 |
T |
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| Q |
119 |
tatatcgcataatgtaacgccttggacagattcagaacatgcaaaacattgccaaaaatatcgtaatagacaactttggcattcatttgcttaagctcaa |
218 |
Q |
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| T |
45500586 |
tatatcgcataatgtaacgccttggacagattcagaacatgcaaaacattgccaaaaatatcgtaatagacaactttggcattcatttgcttaagctcaa |
45500685 |
T |
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| Q |
219 |
cagacataaatccttggccgtcgtagtaaaacttgaccccatctctcctatttttatcaacgtctcctttccatgcctttgagcctccaccactagtcaa |
318 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45500686 |
cagacataaatccttgtccgtcatagtaaaacttgaccccatctctcctatttttatcaacgtctcctttccatgcctttgagcctccaccactagtcaa |
45500785 |
T |
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| Q |
319 |
gaactgcatttggctgcaaagccactcaaatttcattaaggtgatattgatgat |
372 |
Q |
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| T |
45500786 |
gaactgcatttggctgcaaagccact-aaatttcattaaggtgatattgatgat |
45500838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 27782432 - 27782353
Alignment:
| Q |
19 |
ataaatacattcataattaaggttgttgatatcattattacaaaggccagatttcacaattttccccaatttatttagat |
98 |
Q |
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||||||||||||| ||||| | |||||||||||||| ||| |||||| ||||||||||||| ||||| |||||||||| |
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| T |
27782432 |
ataaatacattcacaattaggcttgttgatatcattcttaataaggcctgatttcacaatttcccccagcttatttagat |
27782353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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