View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_17 (Length: 315)
Name: NF13610_low_17
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 31831256 - 31831570
Alignment:
| Q |
1 |
tggatttgaccttgctctagaggatttgagcaccagtgtaggtttgaccaaaagaccatccagctggagcaacattattggaaacaacagtacgaccatc |
100 |
Q |
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| T |
31831256 |
tggatttgaccatgctctagaggatttgagcaccagtgtaggtttgaccaaaagaccatccagctggagcaacattattggaaacaacagtacgaccatc |
31831355 |
T |
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| Q |
101 |
actagttgtaaccttaaaagacaaactttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagttttt |
200 |
Q |
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| T |
31831356 |
actagttgtaaccttaaaagacaaactttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagttttt |
31831455 |
T |
|
| Q |
201 |
gagcctttgatggatgcagcatgtacatctccagcaccaccaacatttgtgataagaactaggttaaaataagaatgtccattgatagtgaaccttatac |
300 |
Q |
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| T |
31831456 |
gaccctttgatggatgcagcatgtacatctccagcaccaccaacatttgtgataagaactaggttaaaataagaatgtccattgatagtgaaccttatac |
31831555 |
T |
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| Q |
301 |
ctccctttctcctac |
315 |
Q |
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| T |
31831556 |
ctccctttctcctac |
31831570 |
T |
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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 18300386 - 18300680
Alignment:
| Q |
16 |
tctagaggatttgagcaccagtgtaggtttgaccaaaagaccatccagctggagcaacattattggaaacaacagtacgaccatcactagttgtaacctt |
115 |
Q |
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| T |
18300386 |
tctagcggaattgagcaccagtgtaggtttgaccaaaggaccaaccagatggagcaacattgttggaaatgactgttttgccatcacttgttgtaacctt |
18300485 |
T |
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| Q |
116 |
aaaagacaaactttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggat |
215 |
Q |
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| T |
18300486 |
gaaagacaaagcttggccattaaggtaattgttgctttgccaattttgaccccaatttctagacatttgcatccaccctgatcttgatcctttaatagct |
18300585 |
T |
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| Q |
216 |
gcagcatgtacatctccagcaccaccaacatttgtgataagaactaggttaaaataagaatgtccattgatagtgaaccttatacctccctttct |
310 |
Q |
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| T |
18300586 |
actgaatgtacatcaccagcaccacccacatttgttactagaaccaagttgaagtaagaatgtccattgattgtgaacctaattcctccccttct |
18300680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 42966804 - 42966678
Alignment:
| Q |
126 |
ctttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgta |
225 |
Q |
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||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| | ||| ||||| ||||| || |||||||| ||| ||||| |
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| T |
42966804 |
ctttgaccattgagatagttattgctttgccagttctgcccccagttcctagacatagcttgccatccagtctttgatcccttgatggacacagaatgta |
42966705 |
T |
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| Q |
226 |
catctccagcaccaccaacatttgtga |
252 |
Q |
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| T |
42966704 |
catctccagctccaccaacatttgtga |
42966678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 42975226 - 42975100
Alignment:
| Q |
126 |
ctttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgta |
225 |
Q |
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||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| | ||| ||||| ||||| || |||||||| ||| ||||| |
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| T |
42975226 |
ctttgaccattgagatagttattgctttgccagttctgcccccagttcctagacatagcttgccatccagtctttgatcccttgatggacacagaatgta |
42975127 |
T |
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| Q |
226 |
catctccagcaccaccaacatttgtga |
252 |
Q |
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| T |
42975126 |
catctccagctccaccaacatttgtga |
42975100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 27476811 - 27476987
Alignment:
| Q |
132 |
ccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgtacatctc |
231 |
Q |
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||||| |||||| |||||| ||||| ||||| ||||| ||||||||||| | | |||||||||| |||| |||||||||||| || ||| ||||| | |
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| T |
27476811 |
ccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccaaccagttcttgaccctttgatggatatagaatgaacatccc |
27476910 |
T |
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| Q |
232 |
cagcaccaccaacatttgtgataagaactaggttaaaataagaatgtccattgatagtgaaccttatacctcccttt |
308 |
Q |
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| T |
27476911 |
cagcaccacctacattggtgaccaaaactaggttgaagtaagagtggccatttattgtgaaccttactcctcccttt |
27476987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 27488069 - 27488245
Alignment:
| Q |
132 |
ccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgtacatctc |
231 |
Q |
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||||| |||||| |||||| ||||| ||||| ||||| ||||||||||| | | ||| |||||| |||| |||||||||||| || ||| ||||| | |
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| T |
27488069 |
ccattaagataagagttgctttgccaattttgaccccaatttcttgacattggttgccatccagttcttgaccctttgatggatatagaatgaacatccc |
27488168 |
T |
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| Q |
232 |
cagcaccaccaacatttgtgataagaactaggttaaaataagaatgtccattgatagtgaaccttatacctcccttt |
308 |
Q |
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| T |
27488169 |
cagctccacctacattggtgaccaaaactaggttgaagtaagagtggccatttattgtgaaccttactcctcccttt |
27488245 |
T |
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