View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_22 (Length: 244)
Name: NF13610_low_22
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 46553356 - 46553154
Alignment:
| Q |
24 |
gcaacacaacagtgcaacaccatcaaaacaaccgtacagccaaatgaaaatcaaacaactcaaccaaaatcagattaaaaacattccataaagcatattc |
123 |
Q |
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| T |
46553356 |
gcaacacaacagtgcaacaccatcaaaacaaccgtacagccaaatgaaaatcaaacaactcaaacaaaatcagattaaaaacattccataaagcatattc |
46553257 |
T |
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| Q |
124 |
cataaaatccattcaaaacattccttaataatgttcttttagtcagatttttatttttagatttaattgaggttaagatataatgttatttagtttagtg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46553256 |
cataaaatccattcaaaacattccttaataatgttcttttagtcagatttttatttttagatttaattaaggttaagatataatgttatttagtttagtg |
46553157 |
T |
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| Q |
224 |
att |
226 |
Q |
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||| |
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| T |
46553156 |
att |
46553154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 28830423 - 28830504
Alignment:
| Q |
146 |
ccttaataatgttctttt-agtcagatttttatttttagatttaattgaggttaagatataatgttatttagtttagtgatt |
226 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
28830423 |
ccttaataatgctctttttagtcagatttttatttttagatttaattatggttataatataatgttatttagtttagtgatt |
28830504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 20350855 - 20350815
Alignment:
| Q |
58 |
tacagccaaatgaaaatcaaacaactcaaccaaaatcagat |
98 |
Q |
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|||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
20350855 |
tacaaccaaatgaaaatcaaacaacccaaacaaaatcagat |
20350815 |
T |
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