View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13610_low_23 (Length: 238)

Name: NF13610_low_23
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13610_low_23
NF13610_low_23
[»] chr7 (15 HSPs)
chr7 (1-214)||(4783918-4784131)
chr7 (1-214)||(4816347-4816560)
chr7 (44-214)||(4666777-4666950)
chr7 (52-175)||(4672526-4672649)
chr7 (52-214)||(4643521-4643683)
chr7 (42-214)||(4863762-4863934)
chr7 (57-175)||(4630782-4630900)
chr7 (15-214)||(4636676-4636869)
chr7 (50-142)||(4697345-4697437)
chr7 (54-190)||(4653372-4653508)
chr7 (44-141)||(4846171-4846268)
chr7 (110-214)||(4662899-4663003)
chr7 (47-106)||(4647378-4647437)
chr7 (50-141)||(4712231-4712322)
chr7 (40-92)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (50-214)||(18925825-18925989)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4784131 - 4783918
Alignment:
Q  1 ttccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgcc 100  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784131 ttccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgcc 4784032  T
Q  101 ttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcagcacttggttcagccaaactatcatct 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  4784031 ttgagaacccatagtcacggcataatccttatgaacaggaaccaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatct 4783932  T
Q  201 atgaaaatctgaaa 214  Q
    ||||||||||||||    
T  4783931 atgaaaatctgaaa 4783918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4816560 - 4816347
Alignment:
Q  1 ttccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgcc 100  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4816560 ttccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcgaaagattaactttttcaatttgagagcttccgcc 4816461  T
Q  101 ttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcagcacttggttcagccaaactatcatct 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||||||||||    
T  4816460 atgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccatatcacatcagcaaaaagttcagccaaactatcatct 4816361  T
Q  201 atgaaaatctgaaa 214  Q
    ||||||||||||||    
T  4816360 atgaaaatctgaaa 4816347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 4666777 - 4666950
Alignment:
Q  44 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaca 143  Q
    ||||| |||||| ||||| || |||||||||||| |||||||||||  ||| || ||||||||| ||||||||| ||||||||||||||||||||||||     
T  4666777 tggtactcgttgaagcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataatccttatgaacaggaacc 4666876  T
Q  144 aaaggagcacc---actccaccttatcacatcagcacttggttcagccaaactatcatctatgaaaatctgaaa 214  Q
    | | || ||||   ||||||    | ||| ||||| ||||||||||||| | |||||||||| |||||||||||    
T  4666877 atacgaacaccactactccaataaagcacgtcagcccttggttcagccataatatcatctataaaaatctgaaa 4666950  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 4672526 - 4672649
Alignment:
Q  52 gttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagc 151  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||  |||||||   |||||| || ||||||||||||||||||||||| | | ||||    
T  4672526 gttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagc 4672625  T
Q  152 accactccaccttatcacatcagc 175  Q
    ||||||||| ||||| ||||||||    
T  4672626 accactccaacttataacatcagc 4672649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 214
Target Start/End: Original strand, 4643521 - 4643683
Alignment:
Q  52 gttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagc 151  Q
    |||| |||||||| ||||||||| || |||||| ||||||||||||  ||||| |  |||||| ||  ||||||||||||||||||||||| ||| ||||    
T  4643521 gttgaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagc 4643620  T
Q  152 accactccaccttatcacatcagcacttggttcagccaaactatcatctatgaaaatctgaaa 214  Q
    ||||||||||| ||||||||| ||  ||  |||| ||||| | | ||||||||| ||||||||    
T  4643621 accactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaa 4643683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 4863762 - 4863934
Alignment:
Q  42 tttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 141  Q
    ||||||||| |||||| ||||| |||||| |||||| |||||||||||||||||||  ||| |||    |||| ||| | ||||||||||||||||||||    
T  4863762 tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa 4863861  T
Q  142 caaaaggagcaccactccaccttatcacatcagcacttggttcagccaaactatcatctatgaaaatctgaaa 214  Q
    | | | ||| ||| ||||||| ||||||||||||  ||   ||||||| ||||| | ||||||||||||||||    
T  4863862 ccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaa 4863934  T

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Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 4630782 - 4630900
Alignment:
Q  57 agcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccac 156  Q
    |||||||| |||||||||||| |||||||||||||||||||  |||||||   ||||  |||  ||||||||||||||  |||||| | | |||||||||    
T  4630782 agcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccac 4630881  T
Q  157 tccaccttatcacatcagc 175  Q
    |||||||||||||||||||    
T  4630882 tccaccttatcacatcagc 4630900  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 4636676 - 4636869
Alignment:
Q  15 acatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatag 114  Q
    ||||||||||| || |||||||| | || |||||||||||| |||||||| ||||||| |||| |||||||||||||| ||   || |      ||||||    
T  4636676 acatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaagataaactctttcaatttgagagattaatccct------ccatag 4636769  T
Q  115 tcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcagcacttggttcagccaaactatcatctatgaaaatctgaaa 214  Q
      ||  |||||||||||||||||||||| | | ||||||||||||||| ||||||||| ||  ||  |||| ||||| | | ||||||||| ||||||||    
T  4636770 aaacaacataatccttatgaacaggaaccatacgagcaccactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaa 4636869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 4697437 - 4697345
Alignment:
Q  50 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaac 142  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||  |||||||   ||||| ||| |||||||| ||||||||||||||    
T  4697437 tcgttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaac 4697345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 4653372 - 4653508
Alignment:
Q  54 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcac 153  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  ||| |||   |||||||||  |||||||||||||||||||||  ||| |||||     
T  4653372 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatgaacaggaatcaaacgagcat 4653471  T
Q  154 cactccaccttatcacatcagcacttggttcagccaa 190  Q
      |||||    |||||||||||| |||||||||||||    
T  4653472 tgctccatgaaatcacatcagcatttggttcagccaa 4653508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 4846268 - 4846171
Alignment:
Q  44 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 141  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| |||||||||   ||||||    ||  |||| ||||||||||||||||||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaa 4846171  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 4662899 - 4663003
Alignment:
Q  110 catagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcagcacttggttcagccaaactatcatctatgaaaatc 209  Q
    |||||||||  |||||||||||||||||||||| | | || ||  |||||||||||||||||| ||   |  |||| | ||| |||||||||| ||||||    
T  4662899 catagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctataaaaatc 4662998  T
Q  210 tgaaa 214  Q
    |||||    
T  4662999 tgaaa 4663003  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 4647378 - 4647437
Alignment:
Q  47 taatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgaga 106  Q
    ||||||||| |||||||| |||||||||||| |||||||||||   ||||| ||||||||    
T  4647378 taatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgaga 4647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 4712322 - 4712231
Alignment:
Q  50 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 141  Q
    |||||| ||||| || ||||| |||||| ||||||||| |||||||||   ||||||   |||  |||| ||||||||||||||||||||||    
T  4712322 tcgttgaagcttaattgaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaa 4712231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 4661636 - 4661688
Alignment:
Q  40 attttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagag 92  Q
    |||||| |||| |||| |||||||| ||||||| |||| ||||||||||||||    
T  4661636 attttgataatggttgaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 18925989 - 18925825
Alignment:
Q  50 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaagga 149  Q
    |||||||||||| || |||||||||||| ||| |||||| ||||||||  || ||||   |||||||||  |||||||||||||||||||||| | | ||    
T  18925989 tcgttgtagctttattgaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacga 18925890  T
Q  150 gcaccactccaccttatcacatcagcacttggttcagccaaactatcatctatgaaaatctgaaa 214  Q
    |||||||||||    |||||||||||| || ||||||||||| |||||||||| |||||||||||    
T  18925889 gcaccactccaatgaatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaa 18925825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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