View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_28 (Length: 208)
Name: NF13610_low_28
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 31831280 - 31831096
Alignment:
| Q |
1 |
atcctctagagcaaggtcaaatccagtatcaagtttagaaatactactacacattttaagtattgtagtaaagattagtagtttagtacctcaatagtat |
100 |
Q |
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| T |
31831280 |
atcctctagagcatggtcaaatccagtttcaagtttagaaatactactacacattttaagtattgtagtaaagattagtagtttagtacctcaatagtat |
31831181 |
T |
|
| Q |
101 |
actaggatattaaatagtatgctgctagggaaaatgggtttggttttggttgttttagaggccaatgaagggcatattttaaaatggtcct |
191 |
Q |
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| T |
31831180 |
actaggatattaaatagtatgctgctagggaaaatgggttt------ggttgttttagaggccaatgaagggcatattttaaaatggtcct |
31831096 |
T |
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