View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_4 (Length: 763)
Name: NF13610_low_4
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 21 - 745
Target Start/End: Original strand, 28079730 - 28080454
Alignment:
| Q |
21 |
aaacaatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattcc |
120 |
Q |
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| T |
28079730 |
aaacaatatgaataacatctgggacgacaactcctccgtcatggaagctttcatgaccacctccgacatctctagtttctggcttccaacaccacattcc |
28079829 |
T |
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| Q |
121 |
gccacttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggag |
220 |
Q |
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| T |
28079830 |
gccacttcaaccactgctgcaccagtgcctcctccaccacaacagtctctattcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggag |
28079929 |
T |
|
| Q |
221 |
ccaaagaaagctggacctacgcgattttctggcaatcttcttacgactacaacatggctacaccgctactcggctggggtgatggatattacaaagggga |
320 |
Q |
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| T |
28079930 |
cgaaagaaagctggacctacgcgattttctggcaatcttcttacgactacaccatggctacacctctactcggctggggtgatggatattacaaaggaga |
28080029 |
T |
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| Q |
321 |
agatgacaaagtaaaattgaaacgagttacacctccggaagaacaggctcatcgtagaaagattctccgtgagcttaatacgttaatttctggtggttcg |
420 |
Q |
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| T |
28080030 |
agatgacaaagtaaaattgaaacgagttacacctccggaagaacaggctcatcgtagaaagattctccgtgagcttaatacgttaatttctggtggttca |
28080129 |
T |
|
| Q |
421 |
tctgtctcagatgatgccgttgaggaagatgtcaccgacactgagtggttttttctcacgtcgatgactcaatcctttgtcaacggcaccggatcactga |
520 |
Q |
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| T |
28080130 |
tctgtctctgatgatgccgttgaggaagatgtcaccgacactgagtggttttttctcacgtcgatgactcaatcctttgtcaacggcaccggatcactga |
28080229 |
T |
|
| Q |
521 |
gtcaggcttatttcaattcaaccccggtgtggatcaccggggctgagaggctttccggttcagcatgtgaacgggcccgtgaagcacgggtccatgggtt |
620 |
Q |
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| T |
28080230 |
gtcaggcttatttcaattcaaccccggtgtggatcaccggggctgagaggctttccggttcaccatgtgaacgggcccgtgaagcacgggtccatgggtt |
28080329 |
T |
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| Q |
621 |
tcagaccttggtatgtataccaacttcttcaagtggggtggttgagcttgcttctacggaaatgattccatacaacgctgatctaatggagaagattcgt |
720 |
Q |
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| T |
28080330 |
tcagaccttggtatgtataccaacttcttcaagtggggtggttgagcttgcttctacggaaatgattccatacaacgctgatctaatggagaagattcgt |
28080429 |
T |
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| Q |
721 |
gttttgtttaatttcaacaatcctg |
745 |
Q |
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| T |
28080430 |
gttttgtttaattttaacaatcctg |
28080454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 12884546 - 12884644
Alignment:
| Q |
171 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
269 |
Q |
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| T |
12884546 |
attcaaccaagacactctccaacaacgtcttcaggctttaatcgaaggtgcaaaagaaatctggacctacgctattttctggcaaccttcttacgacta |
12884644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 12836517 - 12836615
Alignment:
| Q |
171 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
269 |
Q |
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| T |
12836517 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12836615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 12868357 - 12868455
Alignment:
| Q |
171 |
attcaatcaagagactctccagcaccgtcttcaagctcttatcgaaggagccaaagaaagctggacctacgcgattttctggcaatcttcttacgacta |
269 |
Q |
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|||||| ||||| |||||||| || |||||||||||| | || ||||| | ||||||| |||||||||||| || ||||||||| ||||||| ||||| |
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| T |
12868357 |
attcaaccaagacactctccaacaacgtcttcaagctttaattgaaggcgtaaaagaaatctggacctacgctatcttctggcaaccttcttatgacta |
12868455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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