View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13610_low_5 (Length: 589)
Name: NF13610_low_5
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 28612116 - 28611567
Alignment:
| Q |
18 |
aagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612116 |
aagtgtgaaggcttgcaattcatttcaagtttcacactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
28612017 |
T |
|
| Q |
118 |
cccctataaatagaggcaatggaattgaaggaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28612016 |
cccctataaatagaggcaatggaattgaaggaaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaataga |
28611917 |
T |
|
| Q |
218 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28611916 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
28611817 |
T |
|
| Q |
318 |
gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611816 |
gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
28611721 |
T |
|
| Q |
418 |
ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctct |
514 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
28611720 |
ttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctct |
28611621 |
T |
|
| Q |
515 |
tttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611620 |
tttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
28611567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 28607354 - 28606802
Alignment:
| Q |
18 |
aagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607354 |
aagtgtgaaggcttgcaattcatttcaagtttcacactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
28607255 |
T |
|
| Q |
118 |
cccctataaatagaggcaatggaattgaaggaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28607254 |
cccctataaatagaggcaatggaattgaaggaaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaataga |
28607155 |
T |
|
| Q |
218 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28607154 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtag |
28607055 |
T |
|
| Q |
318 |
gtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607054 |
gtctcacgggaaacactatattgtatctct----tgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
28606959 |
T |
|
| Q |
418 |
ttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctct |
514 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
28606958 |
ttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctct |
28606859 |
T |
|
| Q |
515 |
tttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaatat |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606858 |
tttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaatat |
28606802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 156 - 568
Target Start/End: Original strand, 14178646 - 14179057
Alignment:
| Q |
156 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
255 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178646 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14178745 |
T |
|
| Q |
256 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnn |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178746 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct----tgtg |
14178841 |
T |
|
| Q |
356 |
nnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14178842 |
tgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttc |
14178941 |
T |
|
| Q |
456 |
cacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
552 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178942 |
cacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc |
14179041 |
T |
|
| Q |
553 |
tcgtcgagcccaacaa |
568 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14179042 |
tcgtcgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 156 - 568
Target Start/End: Original strand, 14173892 - 14174303
Alignment:
| Q |
156 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
255 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173892 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14173991 |
T |
|
| Q |
256 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnn |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173992 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct----tgtg |
14174087 |
T |
|
| Q |
356 |
nnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14174088 |
tgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttc |
14174187 |
T |
|
| Q |
456 |
cacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
552 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174188 |
cacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagc |
14174287 |
T |
|
| Q |
553 |
tcgtcgagcccaacaa |
568 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14174288 |
tcgtcgagcccaacaa |
14174303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 152 - 567
Target Start/End: Original strand, 44161538 - 44161949
Alignment:
| Q |
152 |
gcattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
250 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161538 |
gcatcgaagcagaagtgaaaaacacaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaat |
44161635 |
T |
|
| Q |
251 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnn |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44161636 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctct--- |
44161732 |
T |
|
| Q |
351 |
nnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagaggg |
450 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44161733 |
-tgtgtgtgtaagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagaggg |
44161829 |
T |
|
| Q |
451 |
ttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgt |
547 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161830 |
ttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgt |
44161929 |
T |
|
| Q |
548 |
taagctcgtcgagcccaaca |
567 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44161930 |
taagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 153 - 567
Target Start/End: Original strand, 11104424 - 11104829
Alignment:
| Q |
153 |
cattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatac |
252 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11104424 |
cattgaagcagaagtca-aatacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatac |
11104520 |
T |
|
| Q |
253 |
accgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnn |
352 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11104521 |
accgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctct----- |
11104615 |
T |
|
| Q |
353 |
nnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggtt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||| || |
|
|
| T |
11104616 |
ttgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgatattagaggatt |
11104714 |
T |
|
| Q |
453 |
ttccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
552 |
Q |
| |
|
||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104715 |
ttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagc |
11104814 |
T |
|
| Q |
553 |
tcgtcgagcccaaca |
567 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11104815 |
tcgtcgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 263 - 569
Target Start/End: Complemental strand, 48827000 - 48826700
Alignment:
| Q |
263 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnna |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgta----a |
48826905 |
T |
|
| Q |
363 |
gagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtta |
462 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
48826904 |
gagagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgtta |
48826806 |
T |
|
| Q |
463 |
aatattggtgttc-annnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagc |
561 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
48826805 |
aatattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatc |
48826708 |
T |
|
| Q |
562 |
ccaacaat |
569 |
Q |
| |
|
|||||||| |
|
|
| T |
48826707 |
ccaacaat |
48826700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 540
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
| Q |
370 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattg |
469 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
470 |
gtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttaca |
540 |
Q |
| |
|
|| || | || ||| ||||| || ||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
48708156 |
gtatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca |
48708086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 362 - 455
Target Start/End: Complemental strand, 24726381 - 24726288
Alignment:
| Q |
362 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttc |
455 |
Q |
| |
|
||||| ||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||| ||||||| |
|
|
| T |
24726381 |
agagaatggagagaatattattatgttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 66 - 567
Target Start/End: Complemental strand, 37040927 - 37040426
Alignment:
| Q |
66 |
tgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggct-catttcccctataaatagaggcaatggaattgaaggaaagcattgaagcaga |
164 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
37040927 |
tgacttttagtgtaagagtgtgtgaaccaaatccaactcttacggcttcatttctcttataaatagagacaatgatagtgaaggaaagcattgaagcaga |
37040828 |
T |
|
| Q |
165 |
agtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggta |
264 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37040827 |
agtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggta |
37040728 |
T |
|
| Q |
265 |
tcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnaga |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
37040727 |
tcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctct----tgtgtgtgtgaga |
37040632 |
T |
|
| Q |
365 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaa |
464 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37040631 |
gagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaa |
37040532 |
T |
|
| Q |
465 |
tattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagc |
561 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040531 |
tattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgtcgagc |
37040432 |
T |
|
| Q |
562 |
ccaaca |
567 |
Q |
| |
|
|||||| |
|
|
| T |
37040431 |
ccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 148 - 568
Target Start/End: Original strand, 15290184 - 15290595
Alignment:
| Q |
148 |
gaaagcattgaagcagaagtgagaatacaaa---gcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtggg |
244 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
15290184 |
gaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgt--agaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg- |
15290274 |
T |
|
| Q |
245 |
aaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatc |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
15290275 |
aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgtatc |
15290371 |
T |
|
| Q |
345 |
tctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtatt |
444 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| | |||| ||||| |
|
|
| T |
15290372 |
tcttgtgtgtgta----agagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtatt |
15290467 |
T |
|
| Q |
445 |
agagggttttccacgttaaatattggtgttca---nnnnnnnngctaccgctgcgctgcaagatccaatctc-ttttggattttggaattttaatttaca |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
15290468 |
agagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttaca |
15290567 |
T |
|
| Q |
541 |
cttgcgttaagctcgtcgagcccaacaa |
568 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15290568 |
attgcgttaagctcgtcgagcccaacaa |
15290595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 154 - 567
Target Start/End: Original strand, 12098958 - 12099361
Alignment:
| Q |
154 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
253 |
Q |
| |
|
||||||| |||||||| | ||||||| || ||||||| |||||| ||||| | ||||||||||||||||||||||| ||||| | | | |||||| | |
|
|
| T |
12098958 |
attgaagtagaagtgaaactacaaagtttttgtgtgt--agaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaataga |
12099051 |
T |
|
| Q |
254 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
353 |
Q |
| |
|
| ||| |||||||||||||||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||| |
|
|
| T |
12099052 |
ttgagtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcg |
12099151 |
T |
|
| Q |
354 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
12099152 |
tgta----agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggttt |
12099247 |
T |
|
| Q |
454 |
tccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagct |
553 |
Q |
| |
|
| ||||| |||||||| | |||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
12099248 |
ttcacgtaaaatattgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaact |
12099347 |
T |
|
| Q |
554 |
cgtcgagcccaaca |
567 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12099348 |
cgtcgagcccaaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 188 - 419
Target Start/End: Original strand, 12082002 - 12082227
Alignment:
| Q |
188 |
tgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc |
287 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| ||||||||||| | | |||||||||| | ||||| ||||| |||||||||||||||||| || |
|
|
| T |
12082002 |
tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgc |
12082100 |
T |
|
| Q |
288 |
tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatat |
387 |
Q |
| |
|
||||| |||||| |||| |||||| || |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
12082101 |
tataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctct----tttccgtgtaagagagtggagaaaatattgtaatat |
12082196 |
T |
|
| Q |
388 |
tctttaatatagtggaatatttttcggagttt |
419 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| |
|
|
| T |
12082197 |
tc-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 15302891 - 15302960
Alignment:
| Q |
148 |
gaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
217 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302891 |
gaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 485 - 567
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
| Q |
485 |
gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
567 |
Q |
| |
|
||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084669 |
gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 2757418 - 2757307
Alignment:
| Q |
362 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgtt |
461 |
Q |
| |
|
||||||||||||||||| || |||||| || |||||||||||||| ||||| | |||||| | |||||||||| | || |||| |||| ||| || || |
|
|
| T |
2757418 |
agagagtggagagaatagtgcaatatttttaaatatagtggaata-ttttcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatatt |
2757320 |
T |
|
| Q |
462 |
aaatattggtgtt |
474 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2757319 |
aaatattggtgtt |
2757307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 2757273 - 2757236
Alignment:
| Q |
507 |
caatctcttttggattttggaattttaatttacacttg |
544 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2757273 |
caatttcttttgaattttggaattttaatttacacttg |
2757236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 154 - 568
Target Start/End: Original strand, 12930629 - 12931041
Alignment:
| Q |
154 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
253 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930629 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
12930728 |
T |
|
| Q |
254 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930729 |
ccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctct----tg |
12930824 |
T |
|
| Q |
354 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12930825 |
tgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
12930924 |
T |
|
| Q |
454 |
tccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag |
551 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930925 |
tccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag |
12931024 |
T |
|
| Q |
552 |
ctcgtcgagcccaacaa |
568 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12931025 |
ctcgtcgagcccaacaa |
12931041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 154 - 567
Target Start/End: Original strand, 12935375 - 12935786
Alignment:
| Q |
154 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
253 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935375 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
12935474 |
T |
|
| Q |
254 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935475 |
ccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctct----tg |
12935570 |
T |
|
| Q |
354 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12935571 |
tgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
12935670 |
T |
|
| Q |
454 |
tccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag |
551 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12935671 |
tccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaag |
12935770 |
T |
|
| Q |
552 |
ctcgtcgagcccaaca |
567 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12935771 |
ctcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 17123994 - 17124139
Alignment:
| Q |
18 |
aagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
117 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||| || || ||||||||||||| ||| |
|
|
| T |
17123994 |
aagtgtgaatgtttgcaattcattccaagtttcacactttgaatgttatgacttttggtgtaagaat-tgtgaactaattcaaactcttacggcttgttt |
17124092 |
T |
|
| Q |
118 |
cccctataaatagaggcaatggaattgaaggaaagcattgaagcagaa |
165 |
Q |
| |
|
| ||||||||||| |||||| | ||||||||||||| |||| |||| |
|
|
| T |
17124093 |
-tcttataaatagagtcaatggcaatgaaggaaagcatcgaagtagaa |
17124139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 26505055 - 26504985
Alignment:
| Q |
362 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttt |
432 |
Q |
| |
|
||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | |||||||| |
|
|
| T |
26505055 |
agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggtttt |
26504985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 476
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
364 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaa |
463 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || |||||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
464 |
atattggtgttca |
476 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
514 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
559 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 154 - 567
Target Start/End: Original strand, 34907092 - 34907503
Alignment:
| Q |
154 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
253 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907092 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
34907191 |
T |
|
| Q |
254 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctctnnnnnn |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907192 |
ccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctct----tg |
34907287 |
T |
|
| Q |
354 |
nnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttt |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34907288 |
tgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
34907387 |
T |
|
| Q |
454 |
tccacgttaaatattggtgttca--nnnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaag |
551 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907388 |
tccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaag |
34907487 |
T |
|
| Q |
552 |
ctcgtcgagcccaaca |
567 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34907488 |
ctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 34906923 - 34907056
Alignment:
| Q |
18 |
aagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906923 |
aagtgtgaaggcttgcaattcatttcaagtttcacactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
34907022 |
T |
|
| Q |
118 |
cccctataaatagaggcaatggaattgaaggaaa |
151 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |
|
|
| T |
34907023 |
cccctataaatagaggcaatagaattgaaagaaa |
34907056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 8539002 - 8539552
Alignment:
| Q |
18 |
aagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcattt |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| | ||||||||||| |||| |||| |
|
|
| T |
8539002 |
aagtgtgaaggcttgcaattcattccaagtttcacactctgaatgtcatgacttttggtgtaagag-gtgtgaactatttccaactcttatggcttattt |
8539100 |
T |
|
| Q |
118 |
cccctataaatagaggcaatggaattgaaggaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
8539101 |
cccctataaatagaggca-tggaattgaaggaaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatata |
8539199 |
T |
|
| Q |
218 |
gtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtag |
317 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| | |
|
|
| T |
8539200 |
gtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgg |
8539299 |
T |
|
| Q |
318 |
gtctcacgggaaacact---atattgtatctctnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgg |
414 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
8539300 |
gtctcac-ggaaacactataatattgtatctct----tgtgtgtgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcgg |
8539394 |
T |
|
| Q |
415 |
agtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnnngctaccgctgcgctgcaagatccaatctc |
513 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
8539395 |
agtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctc |
8539494 |
T |
|
| Q |
514 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaatat |
571 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539495 |
ttttagaatttggaattttaatttacacttgcgttaagctcgtcgagcccaacaatat |
8539552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 148 - 567
Target Start/End: Complemental strand, 29107291 - 29106878
Alignment:
| Q |
148 |
gaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaa |
247 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29107291 |
gaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaa |
29107194 |
T |
|
| Q |
248 |
aatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
346 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29107193 |
aatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctc |
29107095 |
T |
|
| Q |
347 |
tnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattag |
446 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29107094 |
t----tgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattag |
29106999 |
T |
|
| Q |
447 |
agggttttccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29106998 |
agggttttccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaattttaatttacacttgca |
29106899 |
T |
|
| Q |
547 |
ttaagctcgtcgagcccaaca |
567 |
Q |
| |
|
|||||||| |||| ||||||| |
|
|
| T |
29106898 |
ttaagctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 148 - 568
Target Start/End: Complemental strand, 42911408 - 42910992
Alignment:
| Q |
148 |
gaaagcattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaa |
246 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42911408 |
gaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaa |
42911309 |
T |
|
| Q |
247 |
aaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
346 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42911308 |
aaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatctt |
42911209 |
T |
|
| Q |
347 |
tnnnnnnnnnnnnnnagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattag |
446 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42911208 |
t----tgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattag |
42911114 |
T |
|
| Q |
447 |
agggttttccacgttaaatattggtgttcannnnnnnngctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcg |
546 |
Q |
| |
|
||||||||||| |||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
42911113 |
agggttttccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttgcg |
42911014 |
T |
|
| Q |
547 |
ttaagctcgtcgagcccaacaa |
568 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42911013 |
ttaagctcgtcgagcccaacaa |
42910992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 475
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
385 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttc |
475 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||| || ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 487 - 568
Target Start/End: Complemental strand, 38994779 - 38994698
Alignment:
| Q |
487 |
taccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
568 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| |||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaa |
38994698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 38997193 - 38997137
Alignment:
| Q |
512 |
tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
568 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||| | |||| |||||||| |
|
|
| T |
38997193 |
tcttttggattctggaattttaatttacacccgcattaagcccttcgaacccaacaa |
38997137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
| Q |
158 |
aagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
257 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg |
51302217 |
T |
|
| Q |
258 |
gtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
346 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302218 |
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 485 - 568
Target Start/End: Original strand, 51302937 - 51303020
Alignment:
| Q |
485 |
gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
568 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaa |
51303020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
| Q |
440 |
gtattagagggttttccacgttaaatattggtgttca |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 567
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
385 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc |
2100283 |
T |
|
| Q |
485 |
gctaccgctgcgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
567 |
Q |
| |
|
|| || || ||||||| | || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100282 |
attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 392
Target Start/End: Complemental strand, 2100753 - 2100723
Alignment:
| Q |
362 |
agagagtggagagaatattgtaatattcttt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2100753 |
agagagtggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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