View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_6 (Length: 568)
Name: NF13610_low_6
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 40 - 550
Target Start/End: Original strand, 33832904 - 33833414
Alignment:
| Q |
40 |
gcatataaagtagcataagagactaacaatggaactgtattcctcattcagaatcagaaccttgccaattgttcacattaggaatcaaacactaacaacc |
139 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33832904 |
gcatataaagaagcataagagactaacaatggaactgtattcctcattcagaatcagaaccttgccaattgttcacattaggaatcaaacactaacaacc |
33833003 |
T |
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| Q |
140 |
tacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaacccttatagtgaaactgtagtgccgctgcaacatga |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833004 |
tacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaacccttatagtgaaactgtagtgccgctgcaacatga |
33833103 |
T |
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| Q |
240 |
actatcgctataatgtatggcaatacaaatccccacgacaaataacagtgaacggtgaatagtgcgcggttcattacacggttaactttcgttgtgtacg |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833104 |
actatcgctataatgtatggcaatacaaatccccacgacaaataacagtgaacggtgaatagtgcgcggttcattacacggttaactttcgttgtgtacg |
33833203 |
T |
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| Q |
340 |
actccaaaacaaatgtttgtttcctcaaataattccagtacctgtacatgttgaactaatcaacagagaatgcagaatgaaattttagtttacatgtaaa |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33833204 |
actccaaaacaaatgtttgtttcctcaaataattccagtacctgtacatgttgaactaattaacagagaatgcagaatgaaattttagtttacatgtaaa |
33833303 |
T |
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| Q |
440 |
tgattattacaataaaccttccaaaattaagatcagttgctagcgggtgaggaaagacagcgactggcggagaagaaattagctttttatgagctcctgt |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33833304 |
tgattattacaataaaccttccaaaattaagatcagttgctagcgggtgaggaaagacagcgactggcggagaagaaattagctttttatgagctcctgt |
33833403 |
T |
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| Q |
540 |
aaaggataata |
550 |
Q |
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||||||||||| |
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| T |
33833404 |
aaaggataata |
33833414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 538
Target Start/End: Complemental strand, 43156676 - 43156591
Alignment:
| Q |
453 |
aaaccttccaaaattaagatcagttgctagcgggtgaggaaagacagcgactggcggagaagaaattagctttttatgagctcctg |
538 |
Q |
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|||||||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||| ||| || |||||||||| |||| |
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| T |
43156676 |
aaaccttccaaaattaagatcagtagcaagggggtgaggaaagacagcaactgggggagaagtaataagtcttttatgagcccctg |
43156591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 538
Target Start/End: Complemental strand, 43144316 - 43144231
Alignment:
| Q |
453 |
aaaccttccaaaattaagatcagttgctagcgggtgaggaaagacagcgactggcggagaagaaattagctttttatgagctcctg |
538 |
Q |
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| T |
43144316 |
aaaccttccaaaattaagatcagtagcaagggggtgaggaaagagagcaagtgggggagaagtaataagtcttttatgagcccctg |
43144231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 376
Target Start/End: Complemental strand, 43156859 - 43156750
Alignment:
| Q |
267 |
aatccccacgacaaataacagtgaacggtgaatagtgcgcggttcattacacggttaactttcgttgtgtacgactccaaaacaaatgtttgtttcctca |
366 |
Q |
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| T |
43156859 |
aatccccatgacaaatagcagtgaacaccaaacaatgcacggttcatcacccagttaatgtttgttgtatatgactccaaaacaaatgtttgtttcctca |
43156760 |
T |
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| Q |
367 |
aataattcca |
376 |
Q |
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| T |
43156759 |
agtaattcca |
43156750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 43156999 - 43156936
Alignment:
| Q |
127 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttc |
190 |
Q |
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||||||||||||||||| |||||| |||||| |||| ||||||| ||||||| |||||| |||| |
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| T |
43156999 |
aacactaacaacctaccaaaaaaggaaaagtagtgtgctcaccagcagaagtataggccgtttc |
43156936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 43144638 - 43144556
Alignment:
| Q |
127 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaaccctta |
209 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||||||||||| || | |||||| |||||| |
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| T |
43144638 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatccctta |
43144556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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