View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_7 (Length: 535)
Name: NF13610_low_7
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 23 - 376
Target Start/End: Original strand, 7657055 - 7657408
Alignment:
| Q |
23 |
cagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtgg |
122 |
Q |
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| T |
7657055 |
cagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtgg |
7657154 |
T |
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| Q |
123 |
tggaggaaacaataacaacaaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagcag |
222 |
Q |
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| T |
7657155 |
tggaggaaacaataacaacaaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtagccaacaaggacaaaatcctcaacaacagcag |
7657254 |
T |
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| Q |
223 |
cttcagcaacagttacaacagctgcaacaacttcaacatattaagggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccac |
322 |
Q |
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| T |
7657255 |
cttcagcaacagttacaacagctgcaacaacttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccac |
7657354 |
T |
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| Q |
323 |
caccaaatcaaaatacaaatatgaaaggtgttaagttcaatttgcctgaagagt |
376 |
Q |
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| T |
7657355 |
caccaaatcaaaatacaaatatgaaaggtgttaagttcaatttgcctgaagagt |
7657408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 7651678 - 7651875
Alignment:
| Q |
23 |
cagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtgg |
122 |
Q |
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| T |
7651678 |
cagaactttggtgtgctccaacggagaacaacaacaataacaaccataacaacatggcaaaccagatgaagaacattcaaattgacactggaaaaggtgg |
7651777 |
T |
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| Q |
123 |
tggaggaaacaataacaacaaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagc |
220 |
Q |
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| T |
7651778 |
tggagaaaacaataacaacaatgggcaaaaggatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaacaacagc |
7651875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 7651868 - 7652006
Alignment:
| Q |
237 |
acaacagctgcaacaacttcaacatattaagggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaat |
336 |
Q |
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| T |
7651868 |
acaacagcttcaacaacttcagcagatgaaaggacttgaagatcttaaggggactcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaat |
7651967 |
T |
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| Q |
337 |
acaaatatgaaaggtgttaagttcaatttgcctgaagag |
375 |
Q |
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| T |
7651968 |
ccaaatatgaaaggtgttaaggtcaatttgcctaaagag |
7652006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 42825128 - 42825059
Alignment:
| Q |
447 |
gacactaggaggcttcattgttactgatgaagaagatgaggatgaggaacaaaacaatgacgatgaggag |
516 |
Q |
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| T |
42825128 |
gacactaggaggcttcattgttactgatgaagaagatgaggatgaggaacaaaacaatgacgatgaggag |
42825059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 48539284 - 48539207
Alignment:
| Q |
49 |
aacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtggtgga |
126 |
Q |
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| T |
48539284 |
aacaacaacaataataatcagaacaaccttgttaatcagttaaagaacatgcaaattgataatggcaaaggtggtgga |
48539207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 48573539 - 48573462
Alignment:
| Q |
49 |
aacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtggtgga |
126 |
Q |
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|||||||||||||| || ||||||||| || ||||| | ||||||||||| ||||| ||||| |||||||||||| |
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| T |
48573539 |
aacaacaacaataataatcagaacaaccttgttaatcagttaaagaacatgcaaattgataatggcaaaggtggtgga |
48573462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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