View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13610_low_8 (Length: 524)
Name: NF13610_low_8
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 1080815 - 1080411
Alignment:
| Q |
18 |
acacactccctatttataacatagaaatccaatttgaaacaattttaggatggtcaaaatgaattgtcataacaacatgattagtgatttcaaaggggca |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080815 |
acacgctccctatttataacatagaaatccaatttgaaacaattttaggatggtcaaaatgaattgtcataacaacatgattagtgatttcaaaggggca |
1080716 |
T |
|
| Q |
118 |
aacatttagcatcagtgtgttgaatttactatctcttccttaaatgatacctctttgagtttgtgccttgttaactttgagtatatatttgacaagtcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1080715 |
aacatttagcatcagtgtgttgaatttactatctcttccttaaatgatacctctttgagtttgtgcctttttaactttgagtatatatttgacaagtcat |
1080616 |
T |
|
| Q |
218 |
ctgaaaatagcaccaagttctgcaaatagaaaaataaaaatttcaagtacctccacgcattcagaatccaaaggaaaccataaaatattgaagtnnnnnn |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1080615 |
ctgaaaatagcaccaagttcttcaaatagaaaaataaaaatttcaagtacttccatgcattcagaatccaaaggaaaccttaaaatattgaagtaaaaat |
1080516 |
T |
|
| Q |
318 |
ntttgagttgttaccttaacttgatttgttcccatgtcaatgaccacagctcctttctttatcgaatcaccacgaactatgttttggattccaacatctg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
1080515 |
ttttgagttgttaccttaacttgatttgttcccatgtcaatgaccacagctcctttctttatcgaatcaccacgaactatgtatgggattccaacatctg |
1080416 |
T |
|
| Q |
418 |
tgacc |
422 |
Q |
| |
|
||||| |
|
|
| T |
1080415 |
tgacc |
1080411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 135 - 462
Target Start/End: Complemental strand, 1042997 - 1042670
Alignment:
| Q |
135 |
tgttgaatttactatctcttccttaaatgatacctctttgagtttgtgccttgttaactttgagtatatatttgacaagtcatctgaaaatagcaccaag |
234 |
Q |
| |
|
||||||||||| |||| || |||||| |||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042997 |
tgttgaatttattatcactgtcttaaaagatacctcttctagtttgtgccttattaactctgaatatatatttgacaagtcatctgaaaatagcaccaag |
1042898 |
T |
|
| Q |
235 |
ttctgcaaatagaaaaataaaaatttcaagtacctccacgcattcagaatccaaaggaaaccataaaatattgaagtnnnnnnntttgagttgttacctt |
334 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
1042897 |
ttcttcaaataacaaaataaaaatttcaagtacctccatgcattcagacgccaaaagaaaccttaaaatattgaagtaaaaagtttttagttgttacctt |
1042798 |
T |
|
| Q |
335 |
aacttgatttgttcccatgtcaatgaccacagctcctttctttatcgaatcaccacgaactatgttttggattccaacatctgtgaccgcaatatccgct |
434 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
1042797 |
aacttgatttgttcccatatcaatgacgacagctcctttctttatccaatcaccacgaactatgtttgggattccaacatctgtgaccacaatatccgct |
1042698 |
T |
|
| Q |
435 |
tcagacgttatttgttcaggattctttg |
462 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
1042697 |
tcagacgttattcgttcaggattctttg |
1042670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 259 - 453
Target Start/End: Complemental strand, 1067003 - 1066809
Alignment:
| Q |
259 |
ttcaagtacctccacgcattcagaatccaaaggaaaccataaaatattgaagtnnnnnnntttgagttgttaccttaacttgatttgttcccatgtcaat |
358 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |||||||| |||| ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
1067003 |
ttcaagtacctccatgcattcagaagccaaaggaaacttaaaaatattcaagtaaaaaaaaaatagttgttacattaacttgatttgttcccgtgtcaat |
1066904 |
T |
|
| Q |
359 |
gaccacagctcctttctttatcgaatcaccacgaactatgttttggattccaacatctgtgaccgcaatatccgcttcagacgttatttgttcag |
453 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
1066903 |
gaccacagctcctttctttatccaatcaccacgaactatgtttcggattccaatatatgtgaccacaatattcgcttcagacgttatttgttcag |
1066809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 1067104 - 1067066
Alignment:
| Q |
91 |
aacatgattagtgatttcaaaggggcaaacatttagcat |
129 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1067104 |
aacatgataagtgatttcaaaggggcaaacatttagcat |
1067066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 1080379 - 1080342
Alignment:
| Q |
476 |
tgttaattgactgctctctctctgttactgtgatgatg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1080379 |
tgttaattgactgctctctctctgttactgttatgatg |
1080342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University