View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13610_low_9 (Length: 501)
Name: NF13610_low_9
Description: NF13610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13610_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Complemental strand, 5233420 - 5232936
Alignment:
| Q |
16 |
aaacttgaactaccagaaaaagatggagcatcgatgttaaatatgaaacactttacacacgtgaatataatgataaaatttaaaccatattaatttggta |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5233420 |
aaacttgaactaccagaaaaagatggagcatcaatgttaaatatgaaacattttacacacgtgaatataataataaaatttaaaccatattaatttggta |
5233321 |
T |
|
| Q |
116 |
atttggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233320 |
atttggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccac |
5233221 |
T |
|
| Q |
216 |
tcgaactcaaccatgaccgaggaatatgatacctatccaaagatt---nnnnnnnnnnnnnnttactctcataatcttcgattacttacatcattattgt |
312 |
Q |
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| T |
5233220 |
tcgaactcaaccatgaccgaggaatatgatacctatccaaagatttaaaaaaaaaaaaaaaattactctcataatcttcgattacttacatcattattgt |
5233121 |
T |
|
| Q |
313 |
aaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttccagcataattacattcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233120 |
aaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttccagcataattacattcat |
5233021 |
T |
|
| Q |
413 |
cacaattgccatgtgctatatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcctatgctact |
497 |
Q |
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| T |
5233020 |
cacaattgccatgtgctatatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcccatgctact |
5232936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 295 - 497
Target Start/End: Complemental strand, 17129047 - 17128848
Alignment:
| Q |
295 |
tacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttc |
394 |
Q |
| |
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||||||||||||| |||||||||| || |||||| ||||||||||| ||||| |||| |||||||||||| ||||||||| || || ||||||| |
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| T |
17129047 |
tacttacatcattgttgtaaagtaaa---ttgtatgaattcttaccatttttgtgtgggttgtccacaatttgttctgcattttttatctgtgaaagttc |
17128951 |
T |
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| Q |
395 |
cagcataattacattcatcacaattgccatgtgctatatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcctatgct |
494 |
Q |
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| T |
17128950 |
cggcataattacaactgccacaattaccacgagctatatatgccggccaatggcgaccaatgctctgaccattaacccatatttcaccctttcccatact |
17128851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
125 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
224 |
Q |
| |
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|||||||| | || |||| ||||||||||||||| ||||||||| |||||||| |||||||||||||| | ||||||||||||||||| || | ||| |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
|
| Q |
225 |
accatgaccgaggaatatgatacctatccaaaga |
258 |
Q |
| |
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|||||| ||||||||||||||||| || ||||| |
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| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
145 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
192 |
Q |
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||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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